Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Notamacropus_20eugenii_20[genbank_20GCA_5F000004035.1_202009-11-06] 277,711 sequences; 3,075,184,024 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq54335 129 5e-25 seq2532 86.0 5e-12 >seq54335 Length=26056 Score = 129 bits (142), Expect = 5e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 3244 AGTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGA 3303 ||| || || ||||| ||| | |||||||| ||||||||||| || || || |||||||| Sbjct 6654 AGTGGTGGAGGAGCTGTTCAGGGATGGGGTGAACTGGGGGCGGATCGTGGCCTTCTTTGA 6713 Query 3304 GTTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAA 3363 ||||||||||||||||||||||| |||||||| | | || | |||| || |||| Sbjct 6714 ATTTGGTGGTGTTATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTTGTGGACAG 6773 Query 3364 CATTGCCGCGTGGATGACAGA 3384 ||||||| ||||||||| || Sbjct 6774 CATTGCCCTGTGGATGACTGA 6794 >seq2532 Length=66247 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 |||||||||| |||| ||||||| || | |||||||| || | | |||| || || Sbjct 36557 TTTCAGTGGCCCAATATGATTCAAGTATATGTGAGCATCTCCCAGAATGTGTACAAAATC 36616 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 ||| | | || |||| | ||||||||||||||| || | || || ||||| | Sbjct 36617 ACCTGACTTTAGGCCTGGGATGTGAGCAATCATGTAGGTGAGCAGGGAATAACTGGCAAT 36676 Query 118584 ATTAAAAGGAACACC--CAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGC 118641 || || | ||||| || ||||||||| | ||| |||||| | ||| ||| | ||| Sbjct 36677 GTTGAATG--ACACCTGGAGGCCCATGTCTCCACATCACTGGTATAGTTGACAAAAAAGC 36734 Query 118642 TCCCCGTTTGCAACATAAAACTG 118664 || || || ||||| ||||| Sbjct 36735 TCACCATTCAATACATAGAACTG 36757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413073960657004