Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq48 120 3e-22
seq71 96.9 4e-15
seq8 93.3 4e-14
>seq48
Length=16487017
Score = 120 bits (132), Expect = 3e-22
Identities = 98/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| ||||| || |||||||| |||||||||||||| || |||||| |||||||||||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || || |||||||| || || ||||||| |||||||||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGC 7775720
>seq71
Length=13082442
Score = 96.9 bits (106), Expect = 4e-15
Identities = 259/388 (67%), Gaps = 21/388 (5%)
Strand=Plus/Minus
Query 16183 TAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAG 16242
||| ||||| |||||| || | |||| | || | || | || ||| | || |||||
Sbjct 3040084 TAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAG 3040025
Query 16243 TTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGC 16302
||| |||||||||| ||| || ||||| ||| ||||| | ||||||||||| |
Sbjct 3040024 TTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGATGT 3039968
Query 16303 AAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTA 16362
|| || | |||||| || || ||||||| |||||| || | | | ||| | ||
Sbjct 3039967 GAAAGAATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATA 3039911
Query 16363 CGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422
|| || ||||| | | |||||| | || ||| ||||| | ||| | ||||
Sbjct 3039910 TGTTGCTTCTTTGTCTCCAATCCAGCACAGT--CCA----GCTTTCTTTTTAACACAAGG 3039857
Query 16423 CATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTA 16480
| ||||| ||| | || | | || ||| |||| | ||| || | ||||| ||
Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAATTC-CTTTCTTTTGA--GTCTTTAATATAAGTG 3039800
Query 16481 TCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG 16540
||||| || | || |||||||| || || |||| || ||| || || || ||||||
Sbjct 3039799 TCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAG 3039744
Query 16541 AAGCATCGAGCCTCCGCTATTTGTACTT 16568
|| || | || | | ||| |||| ||
Sbjct 3039743 AAACAGCAGGCTTAGGTTATCTGTATTT 3039716
>seq8
Length=27308231
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| ||||||||||| ||||| ||||| ||||| | || ||||| |||| |||||
Sbjct 9728540 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 9728599
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| ||
Sbjct 9728600 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATGC 9728658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511402215551920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |