Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq36 295 5e-75 seq208 93.3 3e-14 >seq36 Length=18184789 Score = 295 bits (326), Expect = 5e-75 Identities = 542/792 (68%), Gaps = 2/792 (0%) Strand=Plus/Minus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608 || || || || | ||| || | ||| | ||||| ||||||| || ||||| | ||| Sbjct 7686576 GACCGCACGGGCACCGGCACCGTGTCTGTGTTTGGCTTGCAAGCCCGCTACAACCTCCGA 7686517 Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668 |||| |||||| | | || || |||||||| || |||| || || |||| ||| || Sbjct 7686516 GATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTG 7686457 Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728 | |||||||| || || || || | || || ||| | || |||| || | || Sbjct 7686456 CTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATC 7686397 Query 18729 TGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACG 18788 ||||| | ||||| | | ||| | | | | | || ||| || ||| | Sbjct 7686396 TGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAGGAA 7686337 Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || | || || | || ||||||||||||||||||||||| || ||||| ||||| Sbjct 7686336 GGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAG 7686277 Query 18849 TGTCAAT-CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 | ||| || | |||| |||||| | ||||| || |||| || || || ||||| Sbjct 7686276 A-TGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAAT 7686218 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 ||||| || || | | || | || ||||| | |||||||||| || ||| | || Sbjct 7686217 CAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTCC 7686158 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 | |||| | |||||||||| ||| | | |||||||| || || || ||||| | Sbjct 7686157 TCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGCT 7686098 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 || || || |||||||| |||| || ||||||||||||||||| |||||||||||||| Sbjct 7686097 TTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTGC 7686038 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | || | || || |||||||| | || ||||| ||||| || || | || ||||| Sbjct 7686037 CAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATTT 7685978 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCA 19207 | || || |||| ||||| ||||| |||||||||||||| | | | ||| | || Sbjct 7685977 TGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATTCA 7685918 Query 19208 GCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATAT 19267 ||| ||| |||| |||||| ||| || | |||| ||||| | || | || || Sbjct 7685917 GCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAAAGCCAT 7685858 Query 19268 AAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAA 19327 | || || || || || || | | |||| | ||||| || ||||| | | || Sbjct 7685857 TGATGATTTCAAGGCTGAGGACTTCCTGATTGAAGACTATAACCCTCACCCAGCTATTAA 7685798 Query 19328 AATGGAAATGGC 19339 |||||| ||||| Sbjct 7685797 AATGGAGATGGC 7685786 >seq208 Length=5466430 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| ||| | | |||||||| || || || ||||| | || Sbjct 1463454 ATGGCACTGCCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGCTTTCT 1463513 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || |||||||| |||| || ||||||||||| || || ||||||||||| || | Sbjct 1463514 TGTCAGCTATACCAGCGATCTGGAGATATGGGCCTCGGAGTGCCGTTCAACATCGCCAGT 1463573 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || | || || |||||||| | || || | ||||| || || Sbjct 1463574 TACTCCCTGCTAACCTACATGATTGCTCACATCACAGGCCTAAA 1463617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399494719771770