Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq36 295 5e-75
seq208 93.3 3e-14
>seq36
Length=18184789
Score = 295 bits (326), Expect = 5e-75
Identities = 542/792 (68%), Gaps = 2/792 (0%)
Strand=Plus/Minus
Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608
|| || || || | ||| || | ||| | ||||| ||||||| || ||||| | |||
Sbjct 7686576 GACCGCACGGGCACCGGCACCGTGTCTGTGTTTGGCTTGCAAGCCCGCTACAACCTCCGA 7686517
Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668
|||| |||||| | | || || |||||||| || |||| || || |||| ||| ||
Sbjct 7686516 GATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTG 7686457
Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728
| |||||||| || || || || | || || ||| | || |||| || | ||
Sbjct 7686456 CTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATC 7686397
Query 18729 TGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACG 18788
||||| | ||||| | | ||| | | | | | || ||| || ||| |
Sbjct 7686396 TGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAGGAA 7686337
Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848
|| || | || || | || ||||||||||||||||||||||| || ||||| |||||
Sbjct 7686336 GGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAG 7686277
Query 18849 TGTCAAT-CAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907
| ||| || | |||| |||||| | ||||| || |||| || || || |||||
Sbjct 7686276 A-TGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAAT 7686218
Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967
||||| || || | | || | || ||||| | |||||||||| || ||| | ||
Sbjct 7686217 CAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTCC 7686158
Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027
| |||| | |||||||||| ||| | | |||||||| || || || ||||| |
Sbjct 7686157 TCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGCT 7686098
Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087
|| || || |||||||| |||| || ||||||||||||||||| ||||||||||||||
Sbjct 7686097 TTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTGC 7686038
Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147
| || | || || |||||||| | || ||||| ||||| || || | || |||||
Sbjct 7686037 CAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATTT 7685978
Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCA 19207
| || || |||| ||||| ||||| |||||||||||||| | | | ||| | ||
Sbjct 7685977 TGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATTCA 7685918
Query 19208 GCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATAT 19267
||| ||| |||| |||||| ||| || | |||| ||||| | || | || ||
Sbjct 7685917 GCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAAAGCCAT 7685858
Query 19268 AAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAA 19327
| || || || || || || | | |||| | ||||| || ||||| | | ||
Sbjct 7685857 TGATGATTTCAAGGCTGAGGACTTCCTGATTGAAGACTATAACCCTCACCCAGCTATTAA 7685798
Query 19328 AATGGAAATGGC 19339
|||||| |||||
Sbjct 7685797 AATGGAGATGGC 7685786
>seq208
Length=5466430
Score = 93.3 bits (102), Expect = 3e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031
|||| ||| |||||||| ||| | | |||||||| || || || ||||| | ||
Sbjct 1463454 ATGGCACTGCCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGCTTTCT 1463513
Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091
|| || |||||||| |||| || ||||||||||| || || ||||||||||| || |
Sbjct 1463514 TGTCAGCTATACCAGCGATCTGGAGATATGGGCCTCGGAGTGCCGTTCAACATCGCCAGT 1463573
Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135
|| | || || |||||||| | || || | ||||| || ||
Sbjct 1463574 TACTCCCTGCTAACCTACATGATTGCTCACATCACAGGCCTAAA 1463617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399494719771770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |