Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq36 293 2e-74 seq211 260 1e-64 seq48 226 2e-54 seq6 109 4e-19 seq208 82.4 6e-11 >seq36 Length=18184789 Score = 293 bits (324), Expect = 2e-74 Identities = 505/731 (69%), Gaps = 2/731 (0%) Strand=Plus/Plus Query 101540 GCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCATCTGCT 101599 ||||| | ||||||||| ||||| |||||||||| ||| | | | ||| || || Sbjct 7685786 GCCATCTCCATTTTAATAGCTGGGTGAGGGTTATAGTCTTCAATCAGGAAGTCCTCAGCC 7685845 Query 101600 TTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGGA 101659 || || ||||||||| | || | || | || ||| || | || || ||||| || Sbjct 7685846 TTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGGTCTTGGT 7685905 Query 101660 GTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCT 101719 |||| | ||| ||||| || | |||| |||| | || || ||||||||||| Sbjct 7685906 TCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCC 7685965 Query 101720 ATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAA 101779 | ||| || | ||| || || ||| || |||||||||||||||||| | |||| Sbjct 7685966 AGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGC 7686025 Query 101780 AGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATAC 101839 || || || || |||||||| || ||||| || | |||||||| | |||| || || Sbjct 7686026 AGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTAT 7686085 Query 101840 AGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGC 101899 || ||||| ||||||| |||| | ||||| || |||| | | || || || || Sbjct 7686086 AGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGT 7686145 Query 101900 AACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTA 101959 || |||| ||||| ||| | ||||||||||||||| | |||||||| || | Sbjct 7686146 AATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGA 7686205 Query 101960 GGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAA 102019 || || ||||| || || ||||| | | || || ||| || ||||||| ||| |||| Sbjct 7686206 GGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAA 7686265 Query 102020 TC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGG 102078 || | || | |||| |||||||| || ||||| |||||||| || |||||||| || Sbjct 7686266 TCTGTATTCATC-TCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGG 7686324 Query 102079 TCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCC 102138 ||| | ||||||||| |||||| | || || | || || ||||| || |||||| Sbjct 7686325 TCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCC 7686384 Query 102139 ATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCT 102198 ||| || ||||| || | || || || || ||||| || | || || || | Sbjct 7686385 ATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCTT 7686444 Query 102199 GATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAG 102258 |||||||||| ||| || || | ||||| |||| || || | ||| || || | | Sbjct 7686445 AATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAA 7686504 Query 102259 TGGAAATTCAT 102269 ||||| |||| Sbjct 7686505 AGGAAACTCAT 7686515 >seq211 Length=5372090 Score = 260 bits (288), Expect = 1e-64 Identities = 347/480 (72%), Gaps = 18/480 (4%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||| ||| || || ||||||||||||||||| | || ||| ||| ||||| || ||| Sbjct 3608273 TATCAATCATGTTTTTCATATACTTCAAATTTATGCTGAATGTCTTTTTCTTCCTGGACA 3608214 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | | |||||||| |||||||||| | |||||| ||||||| |||||||| ||||| | Sbjct 3608213 TCGGTAAGAACACCTGGATATTCTGGAAGAAGTTTATATTTCTTTAGATCAATTTCTGAA 3608154 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| | |||| | ||| ||||||| || || |||||| || | ||| | Sbjct 3608153 AAAAACATTTCAC--TTAAATTCTTGCAAAATTCTTGTCACAGTCACT----GATGACTA 3608100 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 | | ||||| |||| ||| | ||||| || ||||||| || ||||| || ||| || Sbjct 3608099 GTTTTCTTCATAACTTCCTTAAAAACAGAGCTGCCTCCAACTACCCAGATCA-GTCCACC 3608041 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||||||| |||||| ||| | ||| | ||| | |||||| | ||| || || | Sbjct 3608040 TTATTTGCTAGTTCTGGAGGTTTGAGAAGGTCTAATGTATCATCCAGACTTTTGGCAAGG 3607981 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 ||||||||| | ||| | ||||| ||||| || ||||||| | |||||| ||| Sbjct 3607980 TAATGAGCTCCTGGAGGAGGTTCCTTCAGTTCTCTGTTGAGAACTAAATTAAT----CCT 3607925 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386 | || |||||||||||||| |||||||| ||||| | || || |||| | | Sbjct 3607924 GTCAA-------TTCTTCTCAGGAATGGAGAACCAGGTCTTCCTCCCTATTATCAACAGA 3607872 Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446 ||||||||| || ||| ||| | || ||||||||| | | ||| | || || |||||| Sbjct 3607871 TTCTGTTTACCTTCTACTGAACAAGTGGTAGTCATTTTCTAGAAGTACTTGAATTCATTC 3607812 >seq48 Length=16487017 Score = 226 bits (250), Expect = 2e-54 Identities = 343/492 (70%), Gaps = 36/492 (7%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTT--CTTGCAC 4025 |||||| || || ||||||||||||||||| |||||||| ||||| | || | || || Sbjct 15404739 ATTAATCATGTTTTTCATATACTTCAAATTTATACTTAATGCTTTTTTTTTTCCCTGGAC 15404798 Query 4026 ATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGG 4085 || || |||||| | |||||||||| |||||| |||||| |||||||| |||||| Sbjct 15404799 ATCAGTAAGAACCCCTGGATATTCTGGGGGAAGTTTATATTTCCTTAGATCAATTTCTGG 15404858 Query 4086 AAAAA-----------AGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134 ||||| | |||||| ||||| ||||||| || | |||| ||| ||| Sbjct 15404859 AAAAACAAACAAACAAACTTGTCACTCTCAAATTCTTGCAAAATACCTGTCAGAAAGAGT 15404918 Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194 | ||| | || | |||| ||| ||||| ||||| || |||| Sbjct 15404919 TGCTGATGACCAGGTTTCTTCATTACTTTCTTATAAACAGAGCTGCCTC----------- 15404967 Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254 ||||| || |||||||||| |||||| ||||| ||| | || |||||||| | | Sbjct 15404968 ---ATGTCCACCTTATTTGCTAGTTCTGGAAGTTCGAGAAGGTCAAATGCATCATCCAGA 15405024 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || || | | |||||||| | | ||| | ||||| | ||| |||||||||| | | Sbjct 15405025 CTTTTGGCAAGATAATGAGCTTCAGGAGGAGGATCCTTCAATTCTCTGCTGAGAACTAAA 15405084 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374 ||||| ||| |||||||||| | ||||||||||||| | ||||| || ||| Sbjct 15405085 TTAATCCTGTCTTTTAAAGGTCCACTCTTCTCAGGAAT--------AGGTCTTCTTGCCC 15405136 Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434 || |||| | ||||| |||| || || |||| || ||| | ||| | ||||| | Sbjct 15405137 ATTATCAACAGATTCTCTTTACCTTCTATTGAAGGAGTTGTACTTATT-TCTGGAAGTAC 15405195 Query 4435 TTAAAATCATTC 4446 || || |||||| Sbjct 15405196 TTGAATTCATTC 15405207 >seq6 Length=29993169 Score = 109 bits (120), Expect = 4e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| ||||||||||| | |||||| ||| ||||||||| || |||||||||| Sbjct 423780 CTTCAGTTCTTTGCTGAGAACTAAATTAATCCTGTTTTTTAAAGGTCGACTCTTCTCAGG 423839 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| ||||| || ||||| || | | |||||||||| ||| Sbjct 423840 AATAGAGAACCAGGTCTTCTTCCCCATTATTAACAGATTCTGTTTACCTG 423889 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| |||||| |||||||| |||||||||||| ||||||| ||||| ||||||| Sbjct 396454 AAGTTTATATTTCCTTAGATCAATTTCTGGAAAAAACGTGTCACTCTCAAATTCTTGCAA 396513 Query 4116 GATCCTAGTCACAAACAG 4133 || || || |||||||| Sbjct 396514 AATTCTTGTTACAAACAG 396531 >seq208 Length=5466430 Score = 82.4 bits (90), Expect = 6e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||| |||||||||||| | |||| || || || || || ||||| || |||||||| Sbjct 1463608 GTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACTCCG 1463549 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | |||||||| | |||| || || || ||||| ||||||| |||| | ||||| Sbjct 1463548 AGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAG 1463489 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925 || |||| | | || || || |||| |||| ||||| ||||| || Sbjct 1463488 AACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAGAGGAAGATCTGAGAC 1463436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242808360406