Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq36 293 2e-74
seq211 260 1e-64
seq48 226 2e-54
seq6 109 4e-19
seq208 82.4 6e-11
>seq36
Length=18184789
Score = 293 bits (324), Expect = 2e-74
Identities = 505/731 (69%), Gaps = 2/731 (0%)
Strand=Plus/Plus
Query 101540 GCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCATCTGCT 101599
||||| | ||||||||| ||||| |||||||||| ||| | | | ||| || ||
Sbjct 7685786 GCCATCTCCATTTTAATAGCTGGGTGAGGGTTATAGTCTTCAATCAGGAAGTCCTCAGCC 7685845
Query 101600 TTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGTCTAGGA 101659
|| || ||||||||| | || | || | || ||| || | || || ||||| ||
Sbjct 7685846 TTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGGTCTTGGT 7685905
Query 101660 GTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCT 101719
|||| | ||| ||||| || | |||| |||| | || || |||||||||||
Sbjct 7685906 TCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCC 7685965
Query 101720 ATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAA 101779
| ||| || | ||| || || ||| || |||||||||||||||||| | ||||
Sbjct 7685966 AGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGC 7686025
Query 101780 AGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATAC 101839
|| || || || |||||||| || ||||| || | |||||||| | |||| || ||
Sbjct 7686026 AGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTAT 7686085
Query 101840 AGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACAAGGCGGC 101899
|| ||||| ||||||| |||| | ||||| || |||| | | || || || ||
Sbjct 7686086 AGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGT 7686145
Query 101900 AACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTA 101959
|| |||| ||||| ||| | ||||||||||||||| | |||||||| || |
Sbjct 7686146 AATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGA 7686205
Query 101960 GGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAA 102019
|| || ||||| || || ||||| | | || || ||| || ||||||| ||| ||||
Sbjct 7686206 GGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAA 7686265
Query 102020 TC-GCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGG 102078
|| | || | |||| |||||||| || ||||| |||||||| || |||||||| ||
Sbjct 7686266 TCTGTATTCATC-TCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGG 7686324
Query 102079 TCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCC 102138
||| | ||||||||| |||||| | || || | || || ||||| || ||||||
Sbjct 7686325 TCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCC 7686384
Query 102139 ATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCT 102198
||| || ||||| || | || || || || ||||| || | || || || |
Sbjct 7686385 ATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCTT 7686444
Query 102199 GATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAG 102258
|||||||||| ||| || || | ||||| |||| || || | ||| || || | |
Sbjct 7686445 AATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAA 7686504
Query 102259 TGGAAATTCAT 102269
||||| ||||
Sbjct 7686505 AGGAAACTCAT 7686515
>seq211
Length=5372090
Score = 260 bits (288), Expect = 1e-64
Identities = 347/480 (72%), Gaps = 18/480 (4%)
Strand=Plus/Minus
Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026
||| ||| || || ||||||||||||||||| | || ||| ||| ||||| || |||
Sbjct 3608273 TATCAATCATGTTTTTCATATACTTCAAATTTATGCTGAATGTCTTTTTCTTCCTGGACA 3608214
Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086
| | |||||||| |||||||||| | |||||| ||||||| |||||||| ||||| |
Sbjct 3608213 TCGGTAAGAACACCTGGATATTCTGGAAGAAGTTTATATTTCTTTAGATCAATTTCTGAA 3608154
Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146
||||| | |||| | ||| ||||||| || || |||||| || | ||| |
Sbjct 3608153 AAAAACATTTCAC--TTAAATTCTTGCAAAATTCTTGTCACAGTCACT----GATGACTA 3608100
Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206
| | ||||| |||| ||| | ||||| || ||||||| || ||||| || ||| ||
Sbjct 3608099 GTTTTCTTCATAACTTCCTTAAAAACAGAGCTGCCTCCAACTACCCAGATCA-GTCCACC 3608041
Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266
|||||||||| |||||| ||| | ||| | ||| | |||||| | ||| || || |
Sbjct 3608040 TTATTTGCTAGTTCTGGAGGTTTGAGAAGGTCTAATGTATCATCCAGACTTTTGGCAAGG 3607981
Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326
||||||||| | ||| | ||||| ||||| || ||||||| | |||||| |||
Sbjct 3607980 TAATGAGCTCCTGGAGGAGGTTCCTTCAGTTCTCTGTTGAGAACTAAATTAAT----CCT 3607925
Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAA 4386
| || |||||||||||||| |||||||| ||||| | || || |||| | |
Sbjct 3607924 GTCAA-------TTCTTCTCAGGAATGGAGAACCAGGTCTTCCTCCCTATTATCAACAGA 3607872
Query 4387 TTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTC 4446
||||||||| || ||| ||| | || ||||||||| | | ||| | || || ||||||
Sbjct 3607871 TTCTGTTTACCTTCTACTGAACAAGTGGTAGTCATTTTCTAGAAGTACTTGAATTCATTC 3607812
>seq48
Length=16487017
Score = 226 bits (250), Expect = 2e-54
Identities = 343/492 (70%), Gaps = 36/492 (7%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTT--CTTGCAC 4025
|||||| || || ||||||||||||||||| |||||||| ||||| | || | || ||
Sbjct 15404739 ATTAATCATGTTTTTCATATACTTCAAATTTATACTTAATGCTTTTTTTTTTCCCTGGAC 15404798
Query 4026 ATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGG 4085
|| || |||||| | |||||||||| |||||| |||||| |||||||| ||||||
Sbjct 15404799 ATCAGTAAGAACCCCTGGATATTCTGGGGGAAGTTTATATTTCCTTAGATCAATTTCTGG 15404858
Query 4086 AAAAA-----------AGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGT 4134
||||| | |||||| ||||| ||||||| || | |||| ||| |||
Sbjct 15404859 AAAAACAAACAAACAAACTTGTCACTCTCAAATTCTTGCAAAATACCTGTCAGAAAGAGT 15404918
Query 4135 TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAG 4194
| ||| | || | |||| ||| ||||| ||||| || ||||
Sbjct 15404919 TGCTGATGACCAGGTTTCTTCATTACTTTCTTATAAACAGAGCTGCCTC----------- 15404967
Query 4195 ACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAA 4254
||||| || |||||||||| |||||| ||||| ||| | || |||||||| | |
Sbjct 15404968 ---ATGTCCACCTTATTTGCTAGTTCTGGAAGTTCGAGAAGGTCAAATGCATCATCCAGA 15405024
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| || || | | |||||||| | | ||| | ||||| | ||| |||||||||| | |
Sbjct 15405025 CTTTTGGCAAGATAATGAGCTTCAGGAGGAGGATCCTTCAATTCTCTGCTGAGAACTAAA 15405084
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCC 4374
||||| ||| |||||||||| | ||||||||||||| | ||||| || |||
Sbjct 15405085 TTAATCCTGTCTTTTAAAGGTCCACTCTTCTCAGGAAT--------AGGTCTTCTTGCCC 15405136
Query 4375 ATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGT 4434
|| |||| | ||||| |||| || || |||| || ||| | ||| | ||||| |
Sbjct 15405137 ATTATCAACAGATTCTCTTTACCTTCTATTGAAGGAGTTGTACTTATT-TCTGGAAGTAC 15405195
Query 4435 TTAAAATCATTC 4446
|| || ||||||
Sbjct 15405196 TTGAATTCATTC 15405207
>seq6
Length=29993169
Score = 109 bits (120), Expect = 4e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| ||||||||||| | |||||| ||| ||||||||| || ||||||||||
Sbjct 423780 CTTCAGTTCTTTGCTGAGAACTAAATTAATCCTGTTTTTTAAAGGTCGACTCTTCTCAGG 423839
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| ||||| || ||||| || | | |||||||||| |||
Sbjct 423840 AATAGAGAACCAGGTCTTCTTCCCCATTATTAACAGATTCTGTTTACCTG 423889
Score = 82.4 bits (90), Expect = 6e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| |||||| |||||||| |||||||||||| ||||||| ||||| |||||||
Sbjct 396454 AAGTTTATATTTCCTTAGATCAATTTCTGGAAAAAACGTGTCACTCTCAAATTCTTGCAA 396513
Query 4116 GATCCTAGTCACAAACAG 4133
|| || || ||||||||
Sbjct 396514 AATTCTTGTTACAAACAG 396531
>seq208
Length=5466430
Score = 82.4 bits (90), Expect = 6e-11
Identities = 122/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812
|||| |||||||||||| | |||| || || || || || ||||| || ||||||||
Sbjct 1463608 GTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACTCCG 1463549
Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872
| |||||||| | |||| || || || ||||| ||||||| |||| | |||||
Sbjct 1463548 AGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAG 1463489
Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925
|| |||| | | || || || |||| |||| ||||| ||||| ||
Sbjct 1463488 AACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAGAGGAAGATCTGAGAC 1463436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361242808360406
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |