Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq71 165 1e-35
seq179 118 1e-21
seq48 114 2e-20
seq8 91.5 2e-13
>seq71
Length=13082442
Score = 165 bits (182), Expect = 1e-35
Identities = 332/478 (69%), Gaps = 22/478 (5%)
Strand=Plus/Minus
Query 24114 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 24173
|||| ||||| ||||| | || | ||| | |||| || || ||| ||| |||||||
Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027
Query 24174 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 24233
| ||| |||||||| | | || |||||| || || || ||||| ||||| ||
Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970
Query 24234 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCA 24293
| || || ||||||||| ||||||| || || |||||||| | | | ||| |||
Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913
Query 24294 TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 24352
|| | ||| ||| |||| | ||| || || || |||||||| ||||||||
Sbjct 3039912 TAT--GTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857
Query 24353 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 24412
| ||| || || |||| |||||| | || |||| || ||||||| ||| || ||
Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798
Query 24413 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 24472
||| | |||||| |||||| ||||| ||||||| ||| ||||| || || |||||
Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742
Query 24473 ACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCAC 24532
||| | || | ||| ||||||| || | | | | | | | || ||| |||| ||
Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTAC 3039683
Query 24533 TATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 24586
| | || || ||| |||||||| || ||||||||||| | |||| |||||| ||||
Sbjct 3039682 TCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626
>seq179
Length=6459238
Score = 118 bits (130), Expect = 1e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| |
Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||||
Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985
Query 53270 CTATTTCT 53277
|| |||||
Sbjct 3619986 CTGTTTCT 3619993
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440
|| ||| ||||||| || ||||| || | || | || | ||||| || || || ||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113
Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500
|| || |||||||||||||||||||||| |||||||| || ||||| | || |||
Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173
Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560
|| ||||| | | || ||||| || || |||| || || || |||||||| || ||
Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233
Query 53561 CTATGTCTCTTATTAGA 53577
| ||| | ||||| ||
Sbjct 3625234 CGATGACGTTTATTTGA 3625250
Score = 102 bits (112), Expect = 1e-16
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| ||||||||||| || | ||| || || || || || || |||| |
Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | || || | || || || |||| || | || ||||| |
Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 54941
|||| || || || |||||| | |||| |||||||||||| ||||| | ||||
Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088
|| ||||||||||||||||| || ||||| || || | ||| ||||| |||| || ||
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148
|| || || || || ||||| || ||||| || || | | ||| || | ||||| |||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 54149 TCCAAGTATATGG 54161
|||||||| ||||
Sbjct 3630708 TCCAAGTAGATGG 3630720
Score = 95.1 bits (104), Expect = 1e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 54413 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 54472
||| |||| | || || |||||||| | || || ||||| || ||||||||| | |||
Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287
Query 54473 GAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 54532
|| || || ||||| || || ||||| | || |||||| || ||||| || || |
Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347
Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCA 54562
|| | ||||| |||||||||||| | ||||
Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377
>seq48
Length=16487017
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||||||||| | ||| |||||||| || | ||| ||||||| || || || |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| |||||||| ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 24277 C 24277
|
Sbjct 7775720 C 7775720
Score = 104 bits (114), Expect = 3e-17
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455
|| |||| ||| || ||||| | |||||||||||||| ||||| |||||||| || ||
Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333
Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
|||||||| || |||||||| | ||| || || ||||||||||||
Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288
>seq8
Length=27308231
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692
|| ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| ||
Sbjct 9743409 ACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGGA 9743468
Query 24693 TATTGAATTGGAAAAATAACAAATC 24717
|| |||||||||||||| |||||||
Sbjct 9743469 TACTGAATTGGAAAAATGACAAATC 9743493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593707454582880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |