Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq73 109 5e-19
seq140 100 2e-16
seq37 100 2e-16
seq94 95.1 1e-14
seq48 95.1 1e-14
seq26 95.1 1e-14
seq4 95.1 1e-14
seq165 91.5 1e-13
seq93 91.5 1e-13
seq60 91.5 1e-13
seq43 91.5 1e-13
seq75 89.7 4e-13
seq46 86.0 5e-12
seq45 86.0 5e-12
seq10 86.0 5e-12
seq199 84.2 2e-11
seq159 84.2 2e-11
seq54 84.2 2e-11
>seq73
Length=13007589
Score = 109 bits (120), Expect = 5e-19
Identities = 90/110 (82%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|||||||||||| | ||| |||||||||||| | || ||||||||||| |||||||||
Sbjct 8615659 GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 8615600
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| ||||||||||||||||| |||||
Sbjct 8615599 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 8615550
>seq140
Length=8386802
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||||| || || |||| ||| || ||||| || || ||||| |
Sbjct 635477 ATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCT 635418
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | || || | ||| || || ||||| |||||| | ||| ||||||
Sbjct 635417 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 635358
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | || |||| |||||| ||||||||| || |||| || | || |||||
Sbjct 635357 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAAC 635298
Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164
||||||||||||||||| |||||
Sbjct 635297 ATTCAGAAGGAATCTACCCTTCA 635275
>seq37
Length=18181243
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || ||||| || || ||||| || || |||||||| || |||| |
Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | ||| || || ||||| |||||| | ||| ||||||
Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141
|||||| | || ||||||||||| |||||||||||| |||| || | || |||||
Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785
Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164
||||||||||| ||||| |||||
Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCA 5582808
>seq94
Length=10919598
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||| | |||||| | ||| |||||||||||| | || ||||||||||| |||||||||
Sbjct 5504787 GATCAGGAAGGTATTCCCTCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 5504846
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| ||||||||||| ||||| |||||
Sbjct 5504847 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5504896
>seq48
Length=16487017
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | ||| |||||||||||| | || |||| |||||| |||||||||
Sbjct 8366769 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 8366828
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
| | ||||| || | || ||||| ||||||||||| ||||| |||||
Sbjct 8366829 GGTGGTCAAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 8366878
>seq26
Length=21800395
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | ||| |||||||||||| | || ||||| ||||| |||||||||
Sbjct 5591801 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5591742
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| ||||||||||| ||||| |||||
Sbjct 5591741 GATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5591692
>seq4
Length=36543856
Score = 95.1 bits (104), Expect = 1e-14
Identities = 87/110 (79%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| ||||| | ||| |||||||||||| | || ||||||||||| |||||||||
Sbjct 27117954 GATAAGGAAGGAATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 27118013
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| ||||||||||||||||| || ||
Sbjct 27118014 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTCCA 27118063
>seq165
Length=7268927
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | ||| ||||||||| || | || ||||||| ||| |||||||||
Sbjct 1007529 GATAAGGAAGGTATTCCCCCTGATCAACAAGGATTGATTTTTGCGGACAAGCAACTGGAA 1007588
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| ||||| || | || ||||| |||||||| || ||||| |||||
Sbjct 1007589 GATGGTCAAACTTTGTCTGACTACAACATTCAGAAAGAGTCTACCCTTCA 1007638
>seq93
Length=11044861
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | ||| |||||||||| | | || |||| |||||| |||||||||
Sbjct 4041583 GATAAGGAAGGTATTCCCCCTGATCAACAAAAATTGATTTTTGTGGGCAAGCAACTGGAA 4041642
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| || | || | || ||||| ||||||||||||||||| |||||
Sbjct 4041643 GATGGTCGAATTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 4041692
>seq60
Length=14251744
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|||||||||||| | ||| | ||||| |||||| | || |||| |||||| |||||||||
Sbjct 8688644 GATAAAGAAGGTATTCCCCTTGATCAGCAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 8688703
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| |||||||||| |||| |||||
Sbjct 8688704 GATGGATGAACTTTGTCTGACTACAACGTTCAGAAGGAGTCTATCCTTCA 8688753
>seq43
Length=17472961
Score = 91.5 bits (100), Expect = 1e-13
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
|| || |||||| | ||| | |||||||| ||| | || ||||||||||| |||||||||
Sbjct 5107112 GAGAAGGAAGGTATTCCCCTTGATCAACAGAGATTGATTTTTGCGGGCAAGCAACTGGAA 5107053
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| ||||| | | || ||||| ||||||||| | ||||| |||||
Sbjct 5107052 GATGGACAAACTTTATCTGACTACAACATTCAGAAGAAGTCTACCCTTCA 5107003
>seq75
Length=12821919
Score = 89.7 bits (98), Expect = 4e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | ||| |||||||||||| | || |||||| | || |||||||||
Sbjct 2199873 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGAGTAAGCAACTGGAA 2199814
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163
||| |||| || | || ||||| ||||||||||| ||||| ||||
Sbjct 2199813 GATCGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTC 2199765
>seq46
Length=16939101
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| || ||| ||| |||||||||||| | || ||||| ||||| |||||||||
Sbjct 5708373 GATAAGGATGGTACTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5708432
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| ||||||||||| ||||| |||||
Sbjct 5708433 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACACTTCA 5708482
>seq45
Length=17031729
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||| | | ||| |||||||||||| | || |||| |||||| |||||||
Sbjct 11225601 GATAAGGAAGATATTCCCCCTGATCAACAAAGATTGATTTTTGTGGGCAAGACACTGGAA 11225660
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||| ||||||||||||||||||| |||||
Sbjct 11225661 GATGGTCGAACTTTGTCTGACTACGATATTCAGAAGGAATCTACCCTTCA 11225710
>seq10
Length=25956607
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| |||||| | ||| |||||||||||||| || ||| |||||| ||||||||
Sbjct 14383128 GATAAGGAAGGTATTCCCCCTGATCAACAAAGACTGATTTTTTTGGGCAAGCAACTGGAT 14383187
Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| |||| || | || ||||| || |||||||| ||||| |||||
Sbjct 14383188 GATGGACGAACTTTGTCTGACTACAACATGCAGAAGGAGTCTACCCTTCA 14383237
>seq199
Length=5747001
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/112 (78%), Gaps = 4/112 (4%)
Strand=Plus/Plus
Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114
||||| ||||| | ||| |||| ||||||| | || |||| |||||| |||||||||
Sbjct 1008499 GATAAGAAAGGTATTCCCCCTGATCGACAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 1008558
Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
||| || ||| | || | |||||||| | ||||||||| ||||| |||||
Sbjct 1008559 GATGGTCGAAA--TTTGTCTGATTACAACACTCAGAAGGAGTCTACCCTTCA 1008608
>seq159
Length=7530659
Score = 84.2 bits (92), Expect = 2e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 29056 ATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAG 29115
|||| |||||| | ||| ||||||||||| | || ||||| |||| ||||||||||
Sbjct 4974660 ATAAGGAAGGTATTCCCCCTCATCAACAAAGATTGATTTTTGCCAGCAAGCAACTGGAAG 4974719
Query 29116 ATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164
|| |||| || | || ||||| ||||||||||| ||||| |||||
Sbjct 4974720 ATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 4974768
>seq54
Length=14529412
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135
|||||||||||| | || || |||||||| |||||||||||| |||| || | ||
Sbjct 2971046 GATCAACAAAGATTGATTTTCGCGGGCAAGCAACTGGAAGATGGATGAACTTTGTCTGAC 2970987
Query 29136 TACAATATTCAGAAGGAATCTACTCTTCA 29164
||||| ||||||||||| ||||| |||||
Sbjct 2970986 TACAACATTCAGAAGGAGTCTACACTTCA 2970958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428326050022430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |