Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq73 109 5e-19 seq140 100 2e-16 seq37 100 2e-16 seq94 95.1 1e-14 seq48 95.1 1e-14 seq26 95.1 1e-14 seq4 95.1 1e-14 seq165 91.5 1e-13 seq93 91.5 1e-13 seq60 91.5 1e-13 seq43 91.5 1e-13 seq75 89.7 4e-13 seq46 86.0 5e-12 seq45 86.0 5e-12 seq10 86.0 5e-12 seq199 84.2 2e-11 seq159 84.2 2e-11 seq54 84.2 2e-11 >seq73 Length=13007589 Score = 109 bits (120), Expect = 5e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| |||||||||||| | || ||||||||||| ||||||||| Sbjct 8615659 GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 8615600 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| ||||||||||||||||| ||||| Sbjct 8615599 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 8615550 >seq140 Length=8386802 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||||| || || |||| ||| || ||||| || || ||||| | Sbjct 635477 ATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCT 635418 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | || || | ||| || || ||||| |||||| | ||| |||||| Sbjct 635417 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 635358 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || |||| |||||| ||||||||| || |||| || | || ||||| Sbjct 635357 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAAC 635298 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||||||||| ||||| Sbjct 635297 ATTCAGAAGGAATCTACCCTTCA 635275 >seq37 Length=18181243 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||||| || || ||||| || || |||||||| || |||| | Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || ||||| |||||| | ||| |||||| Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||||||||| |||||||||||| |||| || | || ||||| Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 ||||||||||| ||||| ||||| Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCA 5582808 >seq94 Length=10919598 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||| | |||||| | ||| |||||||||||| | || ||||||||||| ||||||||| Sbjct 5504787 GATCAGGAAGGTATTCCCTCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 5504846 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| ||||||||||| ||||| ||||| Sbjct 5504847 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5504896 >seq48 Length=16487017 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| |||||||||||| | || |||| |||||| ||||||||| Sbjct 8366769 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 8366828 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 | | ||||| || | || ||||| ||||||||||| ||||| ||||| Sbjct 8366829 GGTGGTCAAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 8366878 >seq26 Length=21800395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| |||||||||||| | || ||||| ||||| ||||||||| Sbjct 5591801 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5591742 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| ||||||||||| ||||| ||||| Sbjct 5591741 GATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5591692 >seq4 Length=36543856 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | ||| |||||||||||| | || ||||||||||| ||||||||| Sbjct 27117954 GATAAGGAAGGAATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 27118013 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| ||||||||||||||||| || || Sbjct 27118014 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTCCA 27118063 >seq165 Length=7268927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| ||||||||| || | || ||||||| ||| ||||||||| Sbjct 1007529 GATAAGGAAGGTATTCCCCCTGATCAACAAGGATTGATTTTTGCGGACAAGCAACTGGAA 1007588 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||||| || | || ||||| |||||||| || ||||| ||||| Sbjct 1007589 GATGGTCAAACTTTGTCTGACTACAACATTCAGAAAGAGTCTACCCTTCA 1007638 >seq93 Length=11044861 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| |||||||||| | | || |||| |||||| ||||||||| Sbjct 4041583 GATAAGGAAGGTATTCCCCCTGATCAACAAAAATTGATTTTTGTGGGCAAGCAACTGGAA 4041642 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| || | || | || ||||| ||||||||||||||||| ||||| Sbjct 4041643 GATGGTCGAATTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 4041692 >seq60 Length=14251744 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| | ||||| |||||| | || |||| |||||| ||||||||| Sbjct 8688644 GATAAAGAAGGTATTCCCCTTGATCAGCAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 8688703 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| |||||||||| |||| ||||| Sbjct 8688704 GATGGATGAACTTTGTCTGACTACAACGTTCAGAAGGAGTCTATCCTTCA 8688753 >seq43 Length=17472961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | ||| | |||||||| ||| | || ||||||||||| ||||||||| Sbjct 5107112 GAGAAGGAAGGTATTCCCCTTGATCAACAGAGATTGATTTTTGCGGGCAAGCAACTGGAA 5107053 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||||| | | || ||||| ||||||||| | ||||| ||||| Sbjct 5107052 GATGGACAAACTTTATCTGACTACAACATTCAGAAGAAGTCTACCCTTCA 5107003 >seq75 Length=12821919 Score = 89.7 bits (98), Expect = 4e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| |||||||||||| | || |||||| | || ||||||||| Sbjct 2199873 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGAGTAAGCAACTGGAA 2199814 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTC 29163 ||| |||| || | || ||||| ||||||||||| ||||| |||| Sbjct 2199813 GATCGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTC 2199765 >seq46 Length=16939101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| || ||| ||| |||||||||||| | || ||||| ||||| ||||||||| Sbjct 5708373 GATAAGGATGGTACTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5708432 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| ||||||||||| ||||| ||||| Sbjct 5708433 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACACTTCA 5708482 >seq45 Length=17031729 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||| | | ||| |||||||||||| | || |||| |||||| ||||||| Sbjct 11225601 GATAAGGAAGATATTCCCCCTGATCAACAAAGATTGATTTTTGTGGGCAAGACACTGGAA 11225660 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||| ||||||||||||||||||| ||||| Sbjct 11225661 GATGGTCGAACTTTGTCTGACTACGATATTCAGAAGGAATCTACCCTTCA 11225710 >seq10 Length=25956607 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| |||||||||||||| || ||| |||||| |||||||| Sbjct 14383128 GATAAGGAAGGTATTCCCCCTGATCAACAAAGACTGATTTTTTTGGGCAAGCAACTGGAT 14383187 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| |||| || | || ||||| || |||||||| ||||| ||||| Sbjct 14383188 GATGGACGAACTTTGTCTGACTACAACATGCAGAAGGAGTCTACCCTTCA 14383237 >seq199 Length=5747001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 4/112 (4%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | ||| |||| ||||||| | || |||| |||||| ||||||||| Sbjct 1008499 GATAAGAAAGGTATTCCCCCTGATCGACAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 1008558 Query 29115 GAT--TCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| || ||| | || | |||||||| | ||||||||| ||||| ||||| Sbjct 1008559 GATGGTCGAAA--TTTGTCTGATTACAACACTCAGAAGGAGTCTACCCTTCA 1008608 >seq159 Length=7530659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 29056 ATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAG 29115 |||| |||||| | ||| ||||||||||| | || ||||| |||| |||||||||| Sbjct 4974660 ATAAGGAAGGTATTCCCCCTCATCAACAAAGATTGATTTTTGCCAGCAAGCAACTGGAAG 4974719 Query 29116 ATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 || |||| || | || ||||| ||||||||||| ||||| ||||| Sbjct 4974720 ATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 4974768 >seq54 Length=14529412 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 |||||||||||| | || || |||||||| |||||||||||| |||| || | || Sbjct 2971046 GATCAACAAAGATTGATTTTCGCGGGCAAGCAACTGGAAGATGGATGAACTTTGTCTGAC 2970987 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCA 29164 ||||| ||||||||||| ||||| ||||| Sbjct 2970986 TACAACATTCAGAAGGAGTCTACACTTCA 2970958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428326050022430