Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq36 241 2e-58 seq208 129 7e-25 seq29 127 2e-24 seq100 105 8e-18 >seq36 Length=18184789 Score = 241 bits (266), Expect = 2e-58 Identities = 538/804 (67%), Gaps = 4/804 (0%) Strand=Plus/Plus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 ||||| ||||||||||| || || | ||| |||| ||| | || | | ||||| Sbjct 7685779 TTAGATGGCCATCTCCATTTTAATAGCTGGGTGAGGGTTATAGTCTTCAATCAGGAAGTC 7685838 Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGG 145654 ||| ||| |||| ||||| ||| | | || | || || |||||| | |||||||| Sbjct 7685839 CTCAGCCTTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGG 7685898 Query 145655 GCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713 | || ||| ||| ||||| | ||||| ||| | | || || | ||| | || Sbjct 7685899 TCTTGGTTCTCGCTGA--AGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGA 7685956 Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773 || || ||||| ||| | || || || |||| ||||| |||| || || | |||| Sbjct 7685957 GCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATG 7686016 Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833 ||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || || || Sbjct 7686017 TAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGAT 7686076 Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGG 145893 |||||||| ||||| || || ||||| || | || |||||||| || || |||| Sbjct 7686077 CGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGG 7686136 Query 145894 CAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTC 145953 || || || | ||||| || || || || ||||| || | | || ||| Sbjct 7686137 CATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTT 7686196 Query 145954 CTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGC 146013 ||| | || || | ||||| | || | | || || ||||| || || Sbjct 7686197 CTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGT 7686256 Query 146014 CCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCG 146073 || |||||||| || || ||| | ||||| || || ||||||||||| || Sbjct 7686257 CCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCA 7686316 Query 146074 TAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCC 146133 || || || |||| || || ||| ||| | ||| | | | | ||||| Sbjct 7686317 TACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCT 7686376 Query 146134 CGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTG 146193 || || || |||||||||||||| || || || | || |||||||| || | | ||| Sbjct 7686377 CGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTG 7686436 Query 146194 GACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTG 146253 || ||| | || ||||| |||||||| || || || ||| ||||||| || | |||||| Sbjct 7686437 GAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTT 7686496 Query 146254 GTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGG 146313 ||||||| || |||| | || ||| ||| ||| || || || || |||| | Sbjct 7686497 GTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACACAGACACG 7686556 Query 146314 GTGCCCACGCCCGTCCTGTCCCCC 146337 ||||| |||||| | |||| || Sbjct 7686557 GTGCCGGTGCCCGTGCGGTCCTCC 7686580 >seq208 Length=5466430 Score = 129 bits (142), Expect = 7e-25 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | ||||||||| ||||||||||| ||||| |||||||| ||| Sbjct 1463614 AGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGC 1463555 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || ||||| || || || |||||||| ||||| || || ||||| || | Sbjct 1463554 ACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAAT 1463495 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || |||||||| || || |||||| || ||||| ||||| Sbjct 1463494 ACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCAT 1463454 >seq29 Length=20348574 Score = 127 bits (140), Expect = 2e-24 Identities = 599/940 (64%), Gaps = 21/940 (2%) Strand=Plus/Minus Query 176321 CAAAAG-TGA-CACTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTG 176378 |||||| ||| || || || |||| ||| || | | || | ||||| || ||| || Sbjct 8622535 CAAAAGATGAACATTAAGACTCTAGGAGCCAAGTTCTTGCCTCCTCTGTA-CTCCTT-TG 8622478 Query 176379 T-TTCTCTTTGGGT-TGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGA 176436 | ||| || |||| || |||||||| || | ||||| | || | || | |||| || Sbjct 8622477 TGTTCACTGTGGGCCTGCTGGGCAATGTCATGGTGGTACTGATCCTTATTAAGTACAAGA 8622418 Query 176437 AGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTC 176496 |||| | | || | ||| | || | || ||| | || || || |||| || | Sbjct 8622417 GATTCAAGAGTATGACCAGCATCTACCTCCTCAATTTGTCCATTTCAGATCTGCTTTTCC 8622358 Query 176497 TTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTA 176556 | || | | || || ||||| ||||| | | | | |||| ||| ||||||| Sbjct 8622357 TGTTCATACTTCCCTTCTGGATTCACTACGCTAGGA---AAAATGACTGGGTTTTTGGTC 8622301 Query 176557 TTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTT 176616 | || ||||||| || ||| || | | ||||||| | ||||| | | |||| Sbjct 8622300 ATACCATGTGTAAGCTCCTCTCTGGCCTTTATTACATGGGCTTATACAGTGAAATTTTTT 8622241 Query 176617 GCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGA 176676 || ||||| | || | ||||||||||||||||| |||||||| || ||| ||| Sbjct 8622240 TTATTGTCCTGTTGACCATTGACAGGTATCTAGCTGTAGTCTATGCCGTGTTTGCCCTGA 8622181 Query 176677 GGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGT 176736 || ||||| |||| |||||| | ||| | | || ||| || ||| | Sbjct 8622180 AAGCCAGGACAGTTACCTTTGGCATCTTCACCAGCATTATCACGTGGGGCTTGTCAGCCT 8622121 Query 176737 TGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGT 176796 || | || ||||||||| ||||||||| ||| || ||| | | ||| | | Sbjct 8622120 TGGCAGCTCTTCCTGAATTTATCTTTCATGAGTCCCAGGAGGAC--TCGGAGGCTCATAT 8622063 Query 176797 GTGAT--CCTTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTG 176850 || ||| || || ||| | | ||||||| || ||| ||| | | Sbjct 8622062 ATGCAGCCCTCGTTATCCCGAGGACAACGAAGACAAATG----GAAACGCTTCCAGGCTC 8622007 Query 176851 CAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATG 176910 | ||| || || |||| | | || || ||| ||| |||||||| | Sbjct 8622006 TGAGAATGAACATCTTGGGTCTTGCTATTCCATTGACCATCATGATCATCTGCTACACGG 8621947 Query 176911 TAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCA 176970 ||| |||| || ||| | || | | | | |||||||| ||||| ||||||||| Sbjct 8621946 GAATCATCAAAAAGCTGCTCAGATGTCGTAATGACAAGAAGTATAAGGCAGTCAGGCTCA 8621887 Query 176971 TCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTAC 177030 |||||||||||||| | | || ||| |||| ||||||||||| ||| | ||| || | Sbjct 8621886 TCTTTGTCATCATGATCGTCTTCTTTCTTTTCTGGACACCCTATAACCTCACTCTTCTTC 8621827 Query 177031 TGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACA 177090 | ||| | ||||| ||| | || ||| | | |||| ||||| | |||||| Sbjct 8621826 TCTCTGCTTTTCAAGCATCTTTTTTTAGGGGGGACTGTGAGAGGAGCAAACAGCTGGACA 8621767 Query 177091 TGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCT 177150 | || ||| | || || | |||| ||| || ||||| ||||||| ||||| | Sbjct 8621766 TAGCAATGCAAGTGACTGAAGTGATTGCCTTCACTCATTGTTGTGTCAACCCTGTGATTT 8621707 Query 177151 ACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG 177210 | || || || || || ||| | | | || | | ||||| |||| || | | | Sbjct 8621706 ATGCCTTTGTTGGAGAACGATTTCGGAAATACTTCTGTCACTTTTTCCGCAGACATATTG 8621647 Query 177211 CCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250 | ||| | || | ||| || || || |||||| |||||| Sbjct 8621646 CAATCCATCTGTTCAATTATATTCCATTCCTGCTTGGTGA 8621607 Score = 127 bits (140), Expect = 2e-24 Identities = 599/940 (64%), Gaps = 21/940 (2%) Strand=Plus/Minus Query 9435 CAAAAG-TGA-CACTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTG 9492 |||||| ||| || || || |||| ||| || | | || | ||||| || ||| || Sbjct 8622535 CAAAAGATGAACATTAAGACTCTAGGAGCCAAGTTCTTGCCTCCTCTGTA-CTCCTT-TG 8622478 Query 9493 T-TTCTCTTTGGGT-TGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGA 9550 | ||| || |||| || |||||||| || | ||||| | || | || | |||| || Sbjct 8622477 TGTTCACTGTGGGCCTGCTGGGCAATGTCATGGTGGTACTGATCCTTATTAAGTACAAGA 8622418 Query 9551 AGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTC 9610 |||| | | || | ||| | || | || ||| | || || || |||| || | Sbjct 8622417 GATTCAAGAGTATGACCAGCATCTACCTCCTCAATTTGTCCATTTCAGATCTGCTTTTCC 8622358 Query 9611 TTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTA 9670 | || | | || || ||||| ||||| | | | | |||| ||| ||||||| Sbjct 8622357 TGTTCATACTTCCCTTCTGGATTCACTACGCTAGGA---AAAATGACTGGGTTTTTGGTC 8622301 Query 9671 TTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTT 9730 | || ||||||| || ||| || | | ||||||| | ||||| | | |||| Sbjct 8622300 ATACCATGTGTAAGCTCCTCTCTGGCCTTTATTACATGGGCTTATACAGTGAAATTTTTT 8622241 Query 9731 GCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGA 9790 || ||||| | || | ||||||||||||||||| |||||||| || ||| ||| Sbjct 8622240 TTATTGTCCTGTTGACCATTGACAGGTATCTAGCTGTAGTCTATGCCGTGTTTGCCCTGA 8622181 Query 9791 GGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGT 9850 || ||||| |||| |||||| | ||| | | || ||| || ||| | Sbjct 8622180 AAGCCAGGACAGTTACCTTTGGCATCTTCACCAGCATTATCACGTGGGGCTTGTCAGCCT 8622121 Query 9851 TGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGT 9910 || | || ||||||||| ||||||||| ||| || ||| | | ||| | | Sbjct 8622120 TGGCAGCTCTTCCTGAATTTATCTTTCATGAGTCCCAGGAGGAC--TCGGAGGCTCATAT 8622063 Query 9911 GTGAT--CCTTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTG 9964 || ||| || || ||| | | ||||||| || ||| ||| | | Sbjct 8622062 ATGCAGCCCTCGTTATCCCGAGGACAACGAAGACAAATG----GAAACGCTTCCAGGCTC 8622007 Query 9965 CAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATG 10024 | ||| || || |||| | | || || ||| ||| |||||||| | Sbjct 8622006 TGAGAATGAACATCTTGGGTCTTGCTATTCCATTGACCATCATGATCATCTGCTACACGG 8621947 Query 10025 TAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCA 10084 ||| |||| || ||| | || | | | | |||||||| ||||| ||||||||| Sbjct 8621946 GAATCATCAAAAAGCTGCTCAGATGTCGTAATGACAAGAAGTATAAGGCAGTCAGGCTCA 8621887 Query 10085 TCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTAC 10144 |||||||||||||| | | || ||| |||| ||||||||||| ||| | ||| || | Sbjct 8621886 TCTTTGTCATCATGATCGTCTTCTTTCTTTTCTGGACACCCTATAACCTCACTCTTCTTC 8621827 Query 10145 TGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACA 10204 | ||| | ||||| ||| | || ||| | | |||| ||||| | |||||| Sbjct 8621826 TCTCTGCTTTTCAAGCATCTTTTTTTAGGGGGGACTGTGAGAGGAGCAAACAGCTGGACA 8621767 Query 10205 TGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCT 10264 | || ||| | || || | |||| ||| || ||||| ||||||| ||||| | Sbjct 8621766 TAGCAATGCAAGTGACTGAAGTGATTGCCTTCACTCATTGTTGTGTCAACCCTGTGATTT 8621707 Query 10265 ACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG 10324 | || || || || || ||| | | | || | | ||||| |||| || | | | Sbjct 8621706 ATGCCTTTGTTGGAGAACGATTTCGGAAATACTTCTGTCACTTTTTCCGCAGACATATTG 8621647 Query 10325 CCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364 | ||| | || | ||| || || || |||||| |||||| Sbjct 8621646 CAATCCATCTGTTCAATTATATTCCATTCCTGCTTGGTGA 8621607 >seq100 Length=10668473 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 138163 TTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATCTCAGACAGGGCCTGG 138222 ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||| ||||||| Sbjct 9801301 TTCTCTGCCTGAGGCATCACTTCCTCCAGGTAAAACTGAATCATCTCTGACAAGGCCTGG 9801360 Query 138223 CAGCCCAGGTAACCCT 138238 ||||||||||||| || Sbjct 9801361 CAGCCCAGGTAACTCT 9801376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590062741420240