Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq36 241 2e-58
seq208 129 7e-25
seq29 127 2e-24
seq100 105 8e-18
>seq36
Length=18184789
Score = 241 bits (266), Expect = 2e-58
Identities = 538/804 (67%), Gaps = 4/804 (0%)
Strand=Plus/Plus
Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595
||||| ||||||||||| || || | ||| |||| ||| | || | | |||||
Sbjct 7685779 TTAGATGGCCATCTCCATTTTAATAGCTGGGTGAGGGTTATAGTCTTCAATCAGGAAGTC 7685838
Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCT-GGGAAAGG 145654
||| ||| |||| ||||| ||| | | || | || || |||||| | ||||||||
Sbjct 7685839 CTCAGCCTTGAAATCATCAATGGCTTTGACTTCTCGAAGAATTCTGAGCTTAGGGAAAGG 7685898
Query 145655 GCCGGGGGCTC-CTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713
| || ||| ||| ||||| | ||||| ||| | | || || | ||| | ||
Sbjct 7685899 TCTTGGTTCTCGCTGA--AGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGA 7685956
Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773
|| || ||||| ||| | || || || |||| ||||| |||| || || | ||||
Sbjct 7685957 GCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATG 7686016
Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833
||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || || ||
Sbjct 7686017 TAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGAT 7686076
Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGG 145893
|||||||| ||||| || || ||||| || | || |||||||| || || ||||
Sbjct 7686077 CGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGG 7686136
Query 145894 CAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAGCCTC 145953
|| || || | ||||| || || || || ||||| || | | || |||
Sbjct 7686137 CATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTT 7686196
Query 145954 CTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGC 146013
||| | || || | ||||| | || | | || || ||||| || ||
Sbjct 7686197 CTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGT 7686256
Query 146014 CCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCG 146073
|| |||||||| || || ||| | ||||| || || ||||||||||| ||
Sbjct 7686257 CCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCA 7686316
Query 146074 TAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCC 146133
|| || || |||| || || ||| ||| | ||| | | | | |||||
Sbjct 7686317 TACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCT 7686376
Query 146134 CGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTG 146193
|| || || |||||||||||||| || || || | || |||||||| || | | |||
Sbjct 7686377 CGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTG 7686436
Query 146194 GACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTG 146253
|| ||| | || ||||| |||||||| || || || ||| ||||||| || | ||||||
Sbjct 7686437 GAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTT 7686496
Query 146254 GTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGAAGACGGACAGG 146313
||||||| || |||| | || ||| ||| ||| || || || || |||| |
Sbjct 7686497 GTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACACAGACACG 7686556
Query 146314 GTGCCCACGCCCGTCCTGTCCCCC 146337
||||| |||||| | |||| ||
Sbjct 7686557 GTGCCGGTGCCCGTGCGGTCCTCC 7686580
>seq208
Length=5466430
Score = 129 bits (142), Expect = 7e-25
Identities = 125/161 (78%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||||| |||| ||| || | ||||||||| ||||||||||| ||||| |||||||| |||
Sbjct 1463614 AGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGC 1463555
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| || || ||||| || || || |||||||| ||||| || || ||||| || |
Sbjct 1463554 ACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAAT 1463495
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|| |||||||| || || |||||| || ||||| |||||
Sbjct 1463494 ACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCAT 1463454
>seq29
Length=20348574
Score = 127 bits (140), Expect = 2e-24
Identities = 599/940 (64%), Gaps = 21/940 (2%)
Strand=Plus/Minus
Query 176321 CAAAAG-TGA-CACTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTG 176378
|||||| ||| || || || |||| ||| || | | || | ||||| || ||| ||
Sbjct 8622535 CAAAAGATGAACATTAAGACTCTAGGAGCCAAGTTCTTGCCTCCTCTGTA-CTCCTT-TG 8622478
Query 176379 T-TTCTCTTTGGGT-TGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGA 176436
| ||| || |||| || |||||||| || | ||||| | || | || | |||| ||
Sbjct 8622477 TGTTCACTGTGGGCCTGCTGGGCAATGTCATGGTGGTACTGATCCTTATTAAGTACAAGA 8622418
Query 176437 AGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTC 176496
|||| | | || | ||| | || | || ||| | || || || |||| || |
Sbjct 8622417 GATTCAAGAGTATGACCAGCATCTACCTCCTCAATTTGTCCATTTCAGATCTGCTTTTCC 8622358
Query 176497 TTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTA 176556
| || | | || || ||||| ||||| | | | | |||| ||| |||||||
Sbjct 8622357 TGTTCATACTTCCCTTCTGGATTCACTACGCTAGGA---AAAATGACTGGGTTTTTGGTC 8622301
Query 176557 TTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTT 176616
| || ||||||| || ||| || | | ||||||| | ||||| | | ||||
Sbjct 8622300 ATACCATGTGTAAGCTCCTCTCTGGCCTTTATTACATGGGCTTATACAGTGAAATTTTTT 8622241
Query 176617 GCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGA 176676
|| ||||| | || | ||||||||||||||||| |||||||| || ||| |||
Sbjct 8622240 TTATTGTCCTGTTGACCATTGACAGGTATCTAGCTGTAGTCTATGCCGTGTTTGCCCTGA 8622181
Query 176677 GGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGT 176736
|| ||||| |||| |||||| | ||| | | || ||| || ||| |
Sbjct 8622180 AAGCCAGGACAGTTACCTTTGGCATCTTCACCAGCATTATCACGTGGGGCTTGTCAGCCT 8622121
Query 176737 TGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGT 176796
|| | || ||||||||| ||||||||| ||| || ||| | | ||| | |
Sbjct 8622120 TGGCAGCTCTTCCTGAATTTATCTTTCATGAGTCCCAGGAGGAC--TCGGAGGCTCATAT 8622063
Query 176797 GTGAT--CCTTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTG 176850
|| ||| || || ||| | | ||||||| || ||| ||| | |
Sbjct 8622062 ATGCAGCCCTCGTTATCCCGAGGACAACGAAGACAAATG----GAAACGCTTCCAGGCTC 8622007
Query 176851 CAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATG 176910
| ||| || || |||| | | || || ||| ||| |||||||| |
Sbjct 8622006 TGAGAATGAACATCTTGGGTCTTGCTATTCCATTGACCATCATGATCATCTGCTACACGG 8621947
Query 176911 TAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCA 176970
||| |||| || ||| | || | | | | |||||||| ||||| |||||||||
Sbjct 8621946 GAATCATCAAAAAGCTGCTCAGATGTCGTAATGACAAGAAGTATAAGGCAGTCAGGCTCA 8621887
Query 176971 TCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTAC 177030
|||||||||||||| | | || ||| |||| ||||||||||| ||| | ||| || |
Sbjct 8621886 TCTTTGTCATCATGATCGTCTTCTTTCTTTTCTGGACACCCTATAACCTCACTCTTCTTC 8621827
Query 177031 TGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACA 177090
| ||| | ||||| ||| | || ||| | | |||| ||||| | ||||||
Sbjct 8621826 TCTCTGCTTTTCAAGCATCTTTTTTTAGGGGGGACTGTGAGAGGAGCAAACAGCTGGACA 8621767
Query 177091 TGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCT 177150
| || ||| | || || | |||| ||| || ||||| ||||||| ||||| |
Sbjct 8621766 TAGCAATGCAAGTGACTGAAGTGATTGCCTTCACTCATTGTTGTGTCAACCCTGTGATTT 8621707
Query 177151 ACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG 177210
| || || || || || ||| | | | || | | ||||| |||| || | | |
Sbjct 8621706 ATGCCTTTGTTGGAGAACGATTTCGGAAATACTTCTGTCACTTTTTCCGCAGACATATTG 8621647
Query 177211 CCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250
| ||| | || | ||| || || || |||||| ||||||
Sbjct 8621646 CAATCCATCTGTTCAATTATATTCCATTCCTGCTTGGTGA 8621607
Score = 127 bits (140), Expect = 2e-24
Identities = 599/940 (64%), Gaps = 21/940 (2%)
Strand=Plus/Minus
Query 9435 CAAAAG-TGA-CACTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTG 9492
|||||| ||| || || || |||| ||| || | | || | ||||| || ||| ||
Sbjct 8622535 CAAAAGATGAACATTAAGACTCTAGGAGCCAAGTTCTTGCCTCCTCTGTA-CTCCTT-TG 8622478
Query 9493 T-TTCTCTTTGGGT-TGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGA 9550
| ||| || |||| || |||||||| || | ||||| | || | || | |||| ||
Sbjct 8622477 TGTTCACTGTGGGCCTGCTGGGCAATGTCATGGTGGTACTGATCCTTATTAAGTACAAGA 8622418
Query 9551 AGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTC 9610
|||| | | || | ||| | || | || ||| | || || || |||| || |
Sbjct 8622417 GATTCAAGAGTATGACCAGCATCTACCTCCTCAATTTGTCCATTTCAGATCTGCTTTTCC 8622358
Query 9611 TTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTA 9670
| || | | || || ||||| ||||| | | | | |||| ||| |||||||
Sbjct 8622357 TGTTCATACTTCCCTTCTGGATTCACTACGCTAGGA---AAAATGACTGGGTTTTTGGTC 8622301
Query 9671 TTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTT 9730
| || ||||||| || ||| || | | ||||||| | ||||| | | ||||
Sbjct 8622300 ATACCATGTGTAAGCTCCTCTCTGGCCTTTATTACATGGGCTTATACAGTGAAATTTTTT 8622241
Query 9731 GCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGA 9790
|| ||||| | || | ||||||||||||||||| |||||||| || ||| |||
Sbjct 8622240 TTATTGTCCTGTTGACCATTGACAGGTATCTAGCTGTAGTCTATGCCGTGTTTGCCCTGA 8622181
Query 9791 GGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGT 9850
|| ||||| |||| |||||| | ||| | | || ||| || ||| |
Sbjct 8622180 AAGCCAGGACAGTTACCTTTGGCATCTTCACCAGCATTATCACGTGGGGCTTGTCAGCCT 8622121
Query 9851 TGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGTTCAGT 9910
|| | || ||||||||| ||||||||| ||| || ||| | | ||| | |
Sbjct 8622120 TGGCAGCTCTTCCTGAATTTATCTTTCATGAGTCCCAGGAGGAC--TCGGAGGCTCATAT 8622063
Query 9911 GTGAT--CCTTACTACCCAGAG----ATGTCTACAAATGTTTGGAGGCGCGCCCACGTTG 9964
|| ||| || || ||| | | ||||||| || ||| ||| | |
Sbjct 8622062 ATGCAGCCCTCGTTATCCCGAGGACAACGAAGACAAATG----GAAACGCTTCCAGGCTC 8622007
Query 9965 CAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATG 10024
| ||| || || |||| | | || || ||| ||| |||||||| |
Sbjct 8622006 TGAGAATGAACATCTTGGGTCTTGCTATTCCATTGACCATCATGATCATCTGCTACACGG 8621947
Query 10025 TAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCA 10084
||| |||| || ||| | || | | | | |||||||| ||||| |||||||||
Sbjct 8621946 GAATCATCAAAAAGCTGCTCAGATGTCGTAATGACAAGAAGTATAAGGCAGTCAGGCTCA 8621887
Query 10085 TCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTAC 10144
|||||||||||||| | | || ||| |||| ||||||||||| ||| | ||| || |
Sbjct 8621886 TCTTTGTCATCATGATCGTCTTCTTTCTTTTCTGGACACCCTATAACCTCACTCTTCTTC 8621827
Query 10145 TGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGACA 10204
| ||| | ||||| ||| | || ||| | | |||| ||||| | ||||||
Sbjct 8621826 TCTCTGCTTTTCAAGCATCTTTTTTTAGGGGGGACTGTGAGAGGAGCAAACAGCTGGACA 8621767
Query 10205 TGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCT 10264
| || ||| | || || | |||| ||| || ||||| ||||||| ||||| |
Sbjct 8621766 TAGCAATGCAAGTGACTGAAGTGATTGCCTTCACTCATTGTTGTGTCAACCCTGTGATTT 8621707
Query 10265 ACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGG 10324
| || || || || || ||| | | | || | | ||||| |||| || | | |
Sbjct 8621706 ATGCCTTTGTTGGAGAACGATTTCGGAAATACTTCTGTCACTTTTTCCGCAGACATATTG 8621647
Query 10325 CCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364
| ||| | || | ||| || || || |||||| ||||||
Sbjct 8621646 CAATCCATCTGTTCAATTATATTCCATTCCTGCTTGGTGA 8621607
>seq100
Length=10668473
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 138163 TTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCATCTCAGACAGGGCCTGG 138222
||||| ||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||
Sbjct 9801301 TTCTCTGCCTGAGGCATCACTTCCTCCAGGTAAAACTGAATCATCTCTGACAAGGCCTGG 9801360
Query 138223 CAGCCCAGGTAACCCT 138238
||||||||||||| ||
Sbjct 9801361 CAGCCCAGGTAACTCT 9801376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590062741420240
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