Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq76 168 8e-37 >seq76 Length=12648969 Score = 168 bits (186), Expect = 8e-37 Identities = 213/293 (73%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 83104 GCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGC 83163 |||||| || ||| ||| ||| || | |||||||||||||||||| |||||||||| Sbjct 8496899 GCTGTATCTCTTCACAGGCACGCCATCTGGACCCACCAAGAACTTCTCAAAGTTCCAGGA 8496958 Query 83164 CACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT 83223 | ||| || | |||||||||||||||| ||| || |||||| || || | | | Sbjct 8496959 GATGTCATTCCTGCACACTGGAGACCAGATGATGGACTTTGGGTCGGCCATTAGAGAGAT 8497018 Query 83224 CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT 83283 || || || || | ||||| ||||| || |||||||| ||||| || || || | Sbjct 8497019 GGCATCATCACTCGGGACTGGCAGTGCCTCCCGCAGGAAGGCAAAGAGAGGGTGAGCTTT 8497078 Query 83284 TGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGG 83343 | || || ||||| |||||||| || ||||| ||||| || || || || || || || Sbjct 8497079 CTCCCCATTCACCTCACACTTCTCAAACAGCATGAAGTTAGGTTCAAACCCATTGCCCGG 8497138 Query 83344 ACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 |||||| |||| |||| || |||||| |||||| | | || ||||||| Sbjct 8497139 TCGGACGAATTTCAAGGAATTCAGGATCTCCTCATTCTTGCCATTCTCCTGGT 8497191 Score = 132 bits (146), Expect = 6e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 ||||||| || ||||| || || || || || ||||| || || || ||||| | ||| Sbjct 8499065 CCTGGTGGCCAAACTGATTGCAAGGAAAGCCGAGCACCACGAGTCCGCGAGCCCTGTGGC 8499124 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||||||||||||||||||| ||||| || ||||| || | ||||| || ||||| | Sbjct 8499125 GCTGCTGCAGCTCGTTCATCTGCGTGTAGTCGCGGACTGTAGTGCCTCAAAGAGACGCCA 8499184 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTA-AGAAGCCTAAGCTCACAGGTTCTCCTCCG 83569 | ||||||||||||| ||| | |||| | ||| ||| | |||||| | || || | | Sbjct 8499185 CATTCTCGATGAGCAGAACCTTGTCCCGCAGAGAGGCC-AGGCTCACTAGCTCCCCGCTG 8499243 Query 83570 GTAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | | |||| |||||||| ||| ||| || Sbjct 8499244 CCCAGCAGGCGAGCTGAGAACTCGTGCACGGA 8499275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608782295416240