Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq73 100 2e-16 seq140 96.9 3e-15 seq37 96.9 3e-15 seq48 87.8 1e-12 seq94 86.0 5e-12 seq26 86.0 5e-12 seq4 86.0 5e-12 seq93 82.4 6e-11 seq60 82.4 6e-11 seq43 82.4 6e-11 >seq73 Length=13007589 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| |||||||||||| | || ||||||||||| ||| ||||| Sbjct 8615659 GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 8615600 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| |||| || | || ||||| ||||| ||||||||||| ||||| Sbjct 8615599 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 8615550 >seq140 Length=8386802 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||||| || || |||| ||| || ||||| || || ||||| | Sbjct 635477 ATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCT 635418 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | || || ||||| || || ||||| |||||| | ||| |||||| Sbjct 635417 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 635358 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || |||| |||||| ||| ||||| || |||| || | || ||||| Sbjct 635357 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAAC 635298 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||||||||| ||||| Sbjct 635297 ATTCAGAAGGAATCTACCCTTCA 635275 >seq37 Length=18181243 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||||| || || ||||| || || |||||||| || |||| | Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || ||||| |||||| | ||| |||||| Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||||||||| ||| |||||||| |||| || | || ||||| Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||| ||||| ||||| Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCA 5582808 >seq48 Length=16487017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | || || |||| ||| || ||||| ||| || |||| | Sbjct 8366676 ATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACCCTTGAGGTCAAACCATCT 8366735 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || ||||| |||||| | ||| |||||| Sbjct 8366736 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 8366795 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || |||| |||||| ||| |||||| | ||||| || | || ||||| Sbjct 8366796 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAGGTGGTCAAACTTTGTCTGACTACAAC 8366855 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||| ||||| ||||| Sbjct 8366856 ATTCAGAAGGAGTCTACCCTTCA 8366878 >seq94 Length=10919598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||| | |||||| | ||| |||||||||||| | || ||||||||||| ||| ||||| Sbjct 5504787 GATCAGGAAGGTATTCCCTCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 5504846 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| |||| || | || ||||| ||||| ||||| ||||| ||||| Sbjct 5504847 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5504896 >seq26 Length=21800395 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| |||||||||||| | || ||||| ||||| ||| ||||| Sbjct 5591801 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5591742 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| |||| || | || ||||| ||||| ||||| ||||| ||||| Sbjct 5591741 GATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5591692 >seq4 Length=36543856 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | ||| |||||||||||| | || ||||||||||| ||| ||||| Sbjct 27117954 GATAAGGAAGGAATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 27118013 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| |||| || | || ||||| ||||| ||||||||||| || || Sbjct 27118014 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTCCA 27118063 >seq93 Length=11044861 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| |||||||||| | | || |||| |||||| ||| ||||| Sbjct 4041583 GATAAGGAAGGTATTCCCCCTGATCAACAAAAATTGATTTTTGTGGGCAAGCAACTGGAA 4041642 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| || | || | || ||||| ||||| ||||||||||| ||||| Sbjct 4041643 GATGGTCGAATTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 4041692 >seq60 Length=14251744 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| | ||||| |||||| | || |||| |||||| ||| ||||| Sbjct 8688644 GATAAAGAAGGTATTCCCCTTGATCAGCAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 8688703 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| |||| || | || ||||| |||| ||||| |||| ||||| Sbjct 8688704 GATGGATGAACTTTGTCTGACTACAACGTTCAGAAGGAGTCTATCCTTCA 8688753 >seq43 Length=17472961 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| | |||||||| ||| | || ||||||||||| ||| ||||| Sbjct 5107112 GAGAAGGAAGGTATTCCCCTTGATCAACAGAGATTGATTTTTGCGGGCAAGCAACTGGAA 5107053 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| ||||| | | || ||||| ||||| ||| | ||||| ||||| Sbjct 5107052 GATGGACAAACTTTATCTGACTACAACATTCAGAAGAAGTCTACCCTTCA 5107003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410787257447084