Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001962.1
Length=128413
Score E
Sequences producing significant alignments: (Bits) Value
seq73 100 2e-16
seq140 96.9 3e-15
seq37 96.9 3e-15
seq48 87.8 1e-12
seq94 86.0 5e-12
seq26 86.0 5e-12
seq4 86.0 5e-12
seq93 82.4 6e-11
seq60 82.4 6e-11
seq43 82.4 6e-11
>seq73
Length=13007589
Score = 100 bits (110), Expect = 2e-16
Identities = 88/110 (80%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|||||||||||| | ||| |||||||||||| | || ||||||||||| ||| |||||
Sbjct 8615659 GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 8615600
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| |||| || | || ||||| ||||| ||||||||||| |||||
Sbjct 8615599 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 8615550
>seq140
Length=8386802
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||||| || || |||| ||| || ||||| || || ||||| |
Sbjct 635477 ATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTCT 635418
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | || || ||||| || || ||||| |||||| | ||| ||||||
Sbjct 635417 GATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 635358
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||| | || |||| |||||| ||| ||||| || |||| || | || |||||
Sbjct 635357 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAAC 635298
Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237
||||| ||||||||||| |||||
Sbjct 635297 ATTCAGAAGGAATCTACCCTTCA 635275
>seq37
Length=18181243
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||||| || || ||||| || || |||||||| || |||| |
Sbjct 5582606 ATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTCT 5582665
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || ||||| || || ||||| |||||| | ||| ||||||
Sbjct 5582666 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 5582725
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||| | || ||||||||||| ||| |||||||| |||| || | || |||||
Sbjct 5582726 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5582785
Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237
||||| ||||| ||||| |||||
Sbjct 5582786 ATTCAGAAGGAGTCTACCCTTCA 5582808
>seq48
Length=16487017
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094
||||| || ||| | || || |||| ||| || ||||| ||| || |||| |
Sbjct 8366676 ATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACCCTTGAGGTCAAACCATCT 8366735
Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154
|| || | | || ||||| || || ||||| |||||| | ||| ||||||
Sbjct 8366736 GATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCAA 8366795
Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214
|||||| | || |||| |||||| ||| |||||| | ||||| || | || |||||
Sbjct 8366796 CAAAGATTGATTTTTGTGGGCAAGCAACTGGAAGGTGGTCAAACTTTGTCTGACTACAAC 8366855
Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237
||||| ||||| ||||| |||||
Sbjct 8366856 ATTCAGAAGGAGTCTACCCTTCA 8366878
>seq94
Length=10919598
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||| | |||||| | ||| |||||||||||| | || ||||||||||| ||| |||||
Sbjct 5504787 GATCAGGAAGGTATTCCCTCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 5504846
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| |||| || | || ||||| ||||| ||||| ||||| |||||
Sbjct 5504847 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5504896
>seq26
Length=21800395
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| |||||| | ||| |||||||||||| | || ||||| ||||| ||| |||||
Sbjct 5591801 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5591742
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| |||| || | || ||||| ||||| ||||| ||||| |||||
Sbjct 5591741 GATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCA 5591692
>seq4
Length=36543856
Score = 86.0 bits (94), Expect = 5e-12
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| ||||| | ||| |||||||||||| | || ||||||||||| ||| |||||
Sbjct 27117954 GATAAGGAAGGAATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 27118013
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| |||| || | || ||||| ||||| ||||||||||| || ||
Sbjct 27118014 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTCCA 27118063
>seq93
Length=11044861
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
||||| |||||| | ||| |||||||||| | | || |||| |||||| ||| |||||
Sbjct 4041583 GATAAGGAAGGTATTCCCCCTGATCAACAAAAATTGATTTTTGTGGGCAAGCAACTGGAA 4041642
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| || | || | || ||||| ||||| ||||||||||| |||||
Sbjct 4041643 GATGGTCGAATTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCA 4041692
>seq60
Length=14251744
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|||||||||||| | ||| | ||||| |||||| | || |||| |||||| ||| |||||
Sbjct 8688644 GATAAAGAAGGTATTCCCCTTGATCAGCAAAGATTGATTTTTGTGGGCAAGCAACTGGAA 8688703
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| |||| || | || ||||| |||| ||||| |||| |||||
Sbjct 8688704 GATGGATGAACTTTGTCTGACTACAACGTTCAGAAGGAGTCTATCCTTCA 8688753
>seq43
Length=17472961
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187
|| || |||||| | ||| | |||||||| ||| | || ||||||||||| ||| |||||
Sbjct 5107112 GAGAAGGAAGGTATTCCCCTTGATCAACAGAGATTGATTTTTGCGGGCAAGCAACTGGAA 5107053
Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237
||| ||||| | | || ||||| ||||| ||| | ||||| |||||
Sbjct 5107052 GATGGACAAACTTTATCTGACTACAACATTCAGAAGAAGTCTACCCTTCA 5107003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 410787257447084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |