Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq36 259 3e-64 >seq36 Length=18184789 Score = 259 bits (286), Expect = 3e-64 Identities = 501/732 (68%), Gaps = 8/732 (1%) Strand=Plus/Plus Query 96904 GCCATGGGCATTTTTAT-GCTAGGGTAAGGGTTATAGTTTTCCAGAATAATGTCATTTGC 96962 ||||| |||||| || ||| |||| ||||||||||| ||| | | | ||| | || Sbjct 7685786 GCCATCTCCATTTTAATAGCT-GGGTGAGGGTTATAGTCTTCAATCAGGAAGTCCTCAGC 7685844 Query 96963 TTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTT--GGGAAAGGCCTG 97020 || ||||||||||| | | | |||| | | | || | | | |||||||| || Sbjct 7685845 CTTGAAATCATCAATGGCTTTGAC--TTCTCGAAGAATTCTGAGCTTAGGGAAAGGTCTT 7685902 Query 97021 GGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCT 97080 || |||| |||||| | | || | |||| ||||||| || || ||||||||| Sbjct 7685903 GGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTATATATGAGCATCT 7685962 Query 97081 CCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTT 97140 || | |||||| | ||| || || || | | |||||||| || ||||| | ||| Sbjct 7685963 CCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTT 7686022 Query 97141 AATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGA 97200 | || || || || |||||||| || |||||||| || |||||||| | |||| || Sbjct 7686023 AGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCAGATCGCTGG 7686082 Query 97201 TATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGG 97260 |||| |||||| ||||||| |||| | ||||| ||||||| | | || || || Sbjct 7686083 TATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCGTGGCATGGA 7686142 Query 97261 GGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCG 97320 || || ||||| |||| |||| ||||||||||||||| | || ||||| || Sbjct 7686143 GGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATCCTTCTGTCA 7686202 Query 97321 GTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCA 97380 || || || | || || | ||| | | | || |||||| || |||| |||| | Sbjct 7686203 TGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAA 7686262 Query 97381 TAAT-TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAAC 97439 |||| ||| || | ||| |||||||| |||||||| ||||| ||||| ||||| || Sbjct 7686263 TAATCTGT-ATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATACAC 7686321 Query 97440 AGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGA 97499 ||||| | |||||||| ||||| | ||| || |||| || ||| || | ||| Sbjct 7686322 TGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGA 7686381 Query 97500 TCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCC 97559 |||||| || ||||| || | || || || | ||||| || | || || || Sbjct 7686382 TCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 7686441 Query 97560 TCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAA 97619 | |||||||||| || || |||| ||||| |||| || || | ||| ||||| | Sbjct 7686442 CTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACGCTTGGTTGTCAG 7686501 Query 97620 GAGAGGAAAATC 97631 | |||||| || Sbjct 7686502 CAAAGGAAACTC 7686513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775944424420