Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq73 100 4e-16
seq37 96.9 5e-15
seq93 91.5 2e-13
seq4 91.5 2e-13
seq140 87.8 3e-12
seq160 86.0 9e-12
seq26 84.2 3e-11
>seq73
Length=13007589
Score = 100 bits (110), Expect = 4e-16
Identities = 132/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 124584 GAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGT 124643
||| | ||| || |||||| ||| | ||| | || || || |||||||||||||||
Sbjct 8615707 GAGGTCGAACCATCTGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAAGAAGGT 8615648
Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703
|| || |||||||||||||| | |||||||| || || ||| | || ||| |||||||
Sbjct 8615647 ATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACT 8615588
Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763
|| || || || ||||| || ||||| || | ||| | ||| | | | || |||
Sbjct 8615587 TTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTGAGGCTTCGTGGT 8615528
Query 124764 GGT 124766
|||
Sbjct 8615527 GGT 8615525
>seq37
Length=18181243
Score = 96.9 bits (106), Expect = 5e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| ||||| || || || ||||| | ||||| || || || || | ||| | |||
Sbjct 5582603 ACGATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTG 5582662
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|||||| ||| ||| | || || || |||||||| |||||||| || ||||||
Sbjct 5582663 TCTGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGAT 5582722
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | |||||||| || || ||| | || ||| ||||||| || || ||
Sbjct 5582723 CAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTAC 5582782
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751
|| ||||| || || || || | ||| | ||| ||
Sbjct 5582783 AACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTA 5582818
>seq93
Length=11044861
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| ||||| || ||| | ||||| | ||||| | ||||| || | ||| | ||| |
Sbjct 4041487 ACGATGCAGATTTTTGTGAAGACTTTGACAGGGGAGACTATCACGCTTGAGGTCGAACCG 4041546
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|||||| ||| ||| | || || || |||||||| |||||||| || ||||||
Sbjct 4041547 TCTGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGAT 4041606
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
||||||| | ||||||| || || ||| | || ||| |||||| || || ||
Sbjct 4041607 CAACAAAAATTGATTTTTGTGGGCAAGCAACTGGAAGATGGTCGAATTTTGTCTGACTAC 4041666
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||||| || ||||| || | ||| | |||
Sbjct 4041667 AACATTCAGAAGGAATCTACCCTTCATCTTGTT 4041699
>seq4
Length=36543856
Score = 91.5 bits (100), Expect = 2e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| ||||| || || | ||||| | |||| || || | | | ||| ||||| ||
Sbjct 27117858 ACGATGCAGATTTTCGTGAAGACTTTCACAGAGAAGACCACCATGCTTGAGGTTGAACCA 27117917
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|||||| ||| ||| | || || || |||||||| ||||| || || ||||||
Sbjct 27117918 TCTGATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGAT 27117977
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | |||||||| || || ||| | || ||| ||||||| || || ||
Sbjct 27117978 CAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTAC 27118037
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||||| || ||||| || | ||| | |||
Sbjct 27118038 AACATTCAGAAGGAATCTACCCTCCATCTTGTT 27118070
>seq140
Length=8386802
Score = 87.8 bits (96), Expect = 3e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|| ||||| || || || ||||| | | || || || || || | ||| | ||| |
Sbjct 635480 ACGATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCG 635421
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|||||| ||| | ||| | || || || |||||||| |||||||| || ||||||
Sbjct 635420 TCTGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGAT 635361
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | ||||||| || || ||| | || || || |||| || || ||
Sbjct 635360 CAACAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTAC 635301
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748
|| ||||| || ||||| || | ||| | |||
Sbjct 635300 AACATTCAGAAGGAATCTACCCTTCATCTTGTT 635268
>seq160
Length=7493426
Score = 86.0 bits (94), Expect = 9e-12
Identities = 159/232 (69%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595
|||||| | || ||| | ||||| | ||||| || || || || | ||||| ||| |
Sbjct 3645964 ACAATGTAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTCGAGATCGAACCG 3645905
Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655
|||| ||| || | ||| || || |||||||| |||||||| || ||||||
Sbjct 3645904 TCCCATACTATTGAAAACGTGAAAGCCAAGATACAAGATAAGGAAGGTATTCC-CCTGAT 3645846
Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715
|||||||| | ||||||||||| ||| | || | | || |||| ||| || ||
Sbjct 3645845 CAACAAAGATTGATTTTTGCAGGCGGTCAACTGGAAGGTGGTTGAACTTTATCTGACTAC 3645786
Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767
|| |||| || || || || || ||| | ||| | | | || |||||||
Sbjct 3645785 AACGTTCAGAAGGAGTCTACCTTTCATCTTGTTCTGAGGCTTCGTGGTGGTA 3645734
>seq26
Length=21800395
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|| || |||||||| |||||||| || |||||||||||||| | ||||||||||| ||
Sbjct 5591810 AAGATACAAGATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAG 5591751
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
||| | || ||| || |||| || || || || ||||| || || || || | |||
Sbjct 5591750 CAACTGGAAGATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCAT 5591691
Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766
| ||| | | | || ||||||
Sbjct 5591690 CTTGTTCTGAGGCTTCGTGGTGGT 5591667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755438001260800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |