Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq73 100 4e-16 seq37 96.9 5e-15 seq93 91.5 2e-13 seq4 91.5 2e-13 seq140 87.8 3e-12 seq160 86.0 9e-12 seq26 84.2 3e-11 >seq73 Length=13007589 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 124584 GAGATTGAAGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGT 124643 ||| | ||| || |||||| ||| | ||| | || || || ||||||||||||||| Sbjct 8615707 GAGGTCGAACCATCTGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAAGAAGGT 8615648 Query 124644 ATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACA 124703 || || |||||||||||||| | |||||||| || || ||| | || ||| ||||||| Sbjct 8615647 ATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACT 8615588 Query 124704 TTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGT 124763 || || || || ||||| || ||||| || | ||| | ||| | | | || ||| Sbjct 8615587 TTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTGAGGCTTCGTGGT 8615528 Query 124764 GGT 124766 ||| Sbjct 8615527 GGT 8615525 >seq37 Length=18181243 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || || ||||| | ||||| || || || || | ||| | ||| Sbjct 5582603 ACGATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTG 5582662 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| ||| | || || || |||||||| |||||||| || |||||| Sbjct 5582663 TCTGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGAT 5582722 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || || ||| | || ||| ||||||| || || || Sbjct 5582723 CAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTAC 5582782 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 || ||||| || || || || | ||| | ||| || Sbjct 5582783 AACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTA 5582818 >seq93 Length=11044861 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | ||||| | ||||| | ||||| || | ||| | ||| | Sbjct 4041487 ACGATGCAGATTTTTGTGAAGACTTTGACAGGGGAGACTATCACGCTTGAGGTCGAACCG 4041546 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| ||| | || || || |||||||| |||||||| || |||||| Sbjct 4041547 TCTGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGAT 4041606 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||||| | ||||||| || || ||| | || ||| |||||| || || || Sbjct 4041607 CAACAAAAATTGATTTTTGTGGGCAAGCAACTGGAAGATGGTCGAATTTTGTCTGACTAC 4041666 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || ||||| || | ||| | ||| Sbjct 4041667 AACATTCAGAAGGAATCTACCCTTCATCTTGTT 4041699 >seq4 Length=36543856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || | ||||| | |||| || || | | | ||| ||||| || Sbjct 27117858 ACGATGCAGATTTTCGTGAAGACTTTCACAGAGAAGACCACCATGCTTGAGGTTGAACCA 27117917 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| ||| | || || || |||||||| ||||| || || |||||| Sbjct 27117918 TCTGATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGAT 27117977 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | |||||||| || || ||| | || ||| ||||||| || || || Sbjct 27117978 CAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTAC 27118037 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || ||||| || | ||| | ||| Sbjct 27118038 AACATTCAGAAGGAATCTACCCTCCATCTTGTT 27118070 >seq140 Length=8386802 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || || || ||||| | | || || || || || | ||| | ||| | Sbjct 635480 ACGATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCG 635421 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||||| ||| | ||| | || || || |||||||| |||||||| || |||||| Sbjct 635420 TCTGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGAT 635361 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | ||||||| || || ||| | || || || |||| || || || Sbjct 635360 CAACAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTAC 635301 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || ||||| || | ||| | ||| Sbjct 635300 AACATTCAGAAGGAATCTACCCTTCATCTTGTT 635268 >seq160 Length=7493426 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 |||||| | || ||| | ||||| | ||||| || || || || | ||||| ||| | Sbjct 3645964 ACAATGTAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTCGAGATCGAACCG 3645905 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 |||| ||| || | ||| || || |||||||| |||||||| || |||||| Sbjct 3645904 TCCCATACTATTGAAAACGTGAAAGCCAAGATACAAGATAAGGAAGGTATTCC-CCTGAT 3645846 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 |||||||| | ||||||||||| ||| | || | | || |||| ||| || || Sbjct 3645845 CAACAAAGATTGATTTTTGCAGGCGGTCAACTGGAAGGTGGTTGAACTTTATCTGACTAC 3645786 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || |||| || || || || || ||| | ||| | | | || ||||||| Sbjct 3645785 AACGTTCAGAAGGAGTCTACCTTTCATCTTGTTCTGAGGCTTCGTGGTGGTA 3645734 >seq26 Length=21800395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || |||||||| |||||||| || |||||||||||||| | ||||||||||| || Sbjct 5591810 AAGATACAAGATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAG 5591751 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | || ||| || |||| || || || || ||||| || || || || | ||| Sbjct 5591750 CAACTGGAAGATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCAT 5591691 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 | ||| | | | || |||||| Sbjct 5591690 CTTGTTCTGAGGCTTCGTGGTGGT 5591667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755438001260800