Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq274 96.9 6e-15 seq24 89.7 9e-13 >seq274 Length=3334443 Score = 96.9 bits (106), Expect = 6e-15 Identities = 104/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||| ||||||||||| |||||||| |||||||| |||||||| | |||||||| Sbjct 2947029 GCATTTTTCGGAGCTCAGCTTAATTCTTTCATCCATGTGATTATGTATTCATATTATGGC 2946970 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| ||| | |||||||| || || | || | Sbjct 2946969 TTAACTGCATTTGG-CCCATGGATTCAGAAA-TATTTGTGGTGGAAGCGATACTTGACCA 2946912 Query 52175 TAATGCAGTTGGTA 52188 || | ||| ||||| Sbjct 2946911 TATTACAGCTGGTA 2946898 Score = 96.9 bits (106), Expect = 6e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 51885 GATAGCCAGAGCATTATGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGT 51944 |||||| |||| | |||| ||||| | | || ||||| | || || |||||||| || Sbjct 2950129 GATAGCTGGAGCTCTGTGGTGGTACTTTGTGTCAAAAGGAGTTGAGTATTTGGATACAGT 2950070 Query 51945 ATTTTTCATACTTAGGAAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTT 52004 || ||||| || ||||| ||| || || || ||| || || || |||||||| | Sbjct 2950069 GTTCTTCATCCTGAGGAAGAAAAACAACCAAGTATCTTTCCTTCATGTGTATCATCACTG 2950010 Query 52005 TACTATGTTTACTCTAGGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 |||||||||||| | | ||||| || ||||| ||| | || ||||| || Sbjct 2950009 TACTATGTTTACATTGTGGTGGATCGGCATTAAGTGGGTGGCAGGAGGACA 2949959 >seq24 Length=22043896 Score = 89.7 bits (98), Expect = 9e-13 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 189467 ATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAG 189526 ||||||||||||| |||||||| |||||| | || | |||||||| ||||| |||||| Sbjct 10644595 ATGCAGATGGTGAAGGAAGGAAAGATGCATGGCTTCCTCCGAATGTACTGGGCCAAGAAG 10644536 Query 189527 ATACTTGAATGGACTAGAACACCTGAAGACG-CTTTGAGTTATAGTATCTATTTGAACAA 189585 || || || ||||| | ||||| || | | | ||||| | |||||| | || | Sbjct 10644535 ATTCTGGAGTGGACCCACTCCCCTGAGGAAGCCCTGGAGTT-TGCGATCTATCTCAATGA 10644477 Query 189586 CAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 189628 | || | || || |||| |||||| || || ||||||||| Sbjct 10644476 CCGGTTTCAGCTGGATGGCAGGGATCCCAATGGCTACGTAGGT 10644434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923174804836240