Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq222 104 3e-17
seq33 102 9e-17
seq116 100 3e-16
seq103 100 3e-16
>seq222
Length=4825589
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
||||||| | ||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1283029 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 1283088
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1283089 TACTAACGAGGA 1283100
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
||||||| | ||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct 1285082 CTCCTCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTCACCACTA 1285141
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1285142 TACTAACGAGGA 1285153
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1308019 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1308078
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1308079 TACTAACGAGGA 1308090
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1310548 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1310489
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 1310488 TACTAACGAGGA 1310477
>seq33
Length=19543152
Score = 102 bits (112), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 4395655 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 4395714
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 4395715 TATACTAACGAGGA 4395728
Score = 102 bits (112), Expect = 9e-17
Identities = 71/81 (88%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
||||| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 4521180 AAAAAGCATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4521239
Query 60117 TCACCACTATACTACCGAGGA 60137
|||||||||||||| ||||||
Sbjct 4521240 TCACCACTATACTAACGAGGA 4521260
Score = 93.3 bits (102), Expect = 5e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117
|||| | |||| || | ||||||||||||| || |||||||||||||||||| |||||
Sbjct 4458264 AAAAAGTACTCCCCGTCGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACT 4458323
Query 60118 CACCACTATACTACCGAGGAT 60138
|||||||||||| |||||||
Sbjct 4458324 GACCACTATACTAACGAGGAT 4458344
>seq116
Length=9671325
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 6664332 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 6664273
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 6664272 ATACTAACGAGGA 6664260
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 9274213 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9274154
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 9274153 TACTAACGAGGA 9274142
>seq103
Length=10584223
Score = 100 bits (110), Expect = 3e-16
Identities = 159/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| | ||||| |||| ||| ||| || || || ||||| |||| |
Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| || || || || | | ||||||||||| ||
Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || || ||||| ||| ||| |||| || | | ||||| || | |||||
Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900870
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| ||||| || | ||||| |||||||| |||||
Sbjct 9900869 TCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 9900824
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 9876588 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 9876529
Query 60126 TACTACCGAGGAT 60138
||||| |||||||
Sbjct 9876528 TACTAACGAGGAT 9876516
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 9880400 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 9880341
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 9880340 TACTAACGAGGA 9880329
Score = 93.3 bits (102), Expect = 5e-14
Identities = 157/227 (69%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
||||| || || |||| ||||| |||| ||| || || || || ||||| |||| |
Sbjct 9901501 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 9901442
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
|| || || | || || |||||||| || || || || | | ||||||||||| ||
Sbjct 9901441 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9901382
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || || ||||| ||| | ||||| || | | ||||| || | |||||
Sbjct 9901381 ATGCCTTCTTTGTCTTGGATCT----TTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9901326
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| ||||| || | ||||| || ||||| |||||
Sbjct 9901325 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571803976445680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |