Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq73 89.7 8e-13
seq4 86.0 9e-12
seq85 84.2 3e-11
>seq73
Length=13007589
Score = 89.7 bits (98), Expect = 8e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| || | || | ||| | |||||||| || || || || || ||
Sbjct 8615526 CCACCACGAAGCCTCAGAACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAC 8615585
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||||| | ||| || | ||| || || ||||||||||||||||| ||||| || |||
Sbjct 8615586 AAAGTTCGACCATCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGGA 8615645
Query 146171 ATTCCTTCTTTATCTTG 146187
|| ||||||||||||||
Sbjct 8615646 ATACCTTCTTTATCTTG 8615662
>seq4
Length=36543856
Score = 86.0 bits (94), Expect = 9e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140
|||||||| || || || || || || | ||||| | ||| || | ||| || ||
Sbjct 27118057 GTAGATTCCTTCTGAATGTTGTAGTCAGACAAAGTTCGACCATCTTCCAGTTGCTTGCCC 27117998
Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 27117997 GCAAAAATCAATCTTTGTTGATCAGGGGGAATTCCTTCCTTATCTTG 27117951
>seq85
Length=11587828
Score = 84.2 bits (92), Expect = 3e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128
||||| |||| ||| || ||||| ||| | || || || ||||||| || ||| |||
Sbjct 256581 ACCAAGTGTAGAGTGGACTCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCCATCTTCT 256522
Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
| ||||||||||||||||||| | || |||||| || || || ||||| || || ||
Sbjct 256521 AGCTGTTTTCCAGCAAAAATCAGACGTTACTGATCTGGTGGGATACCTTCCTTTTCCTG 256463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743508685483520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |