Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq48 95.1 1e-14 seq71 93.3 4e-14 seq8 89.7 5e-13 >seq48 Length=16487017 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| |||| | |||||||| | |||||||| |||||||| || ||||| | Sbjct 7780099 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCC 7780040 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTG 16028 |||| | || ||||| |||||||||||||| || |||| || Sbjct 7780039 CTTCCAGAGAGATATTCTCCATAAAATCAAATGGGTTTTCTG 7779998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| || ||||||||| || || || | |||||||||||| ||||| || | Sbjct 7772403 TTTCTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 7772344 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || ||||| ||||| || || | |||||| | ||| |||||||| Sbjct 7772343 TTTCCATAGCAATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTC 7772289 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || ||||| || | || || ||||| || | || ||||||| |||||||| || Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || |||||||| || ||||| || Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719 Query 16379 AC 16380 || Sbjct 7775718 AC 7775717 >seq71 Length=13082442 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 |||||||| || |||||||| |||||||| || |||| ||||||||||||||||| ||| Sbjct 3041102 TGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTCTCC 3041043 Query 16007 ATAAAATCAAAAGGATTTT 16025 ||| | ||||| ||||||| Sbjct 3041042 ATATAGTCAAATGGATTTT 3041024 >seq8 Length=27308231 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||||||||| ||| | | || ||||| ||| || | | || |||||||| | Sbjct 9722090 TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGCCATAACTGCAAAACG 9722149 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 || ||||| || || |||||||| ||||||||||| ||||| | ||||||||||| Sbjct 9722150 CTGGTATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 9722209 Query 16006 CATAAAATCAAAAGGATTTTTTGA 16029 ||| |||||||| ||||| | ||| Sbjct 9722210 CATGAAATCAAAGGGATTATCTGA 9722233 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || || || || || || ||||| || |||| || ||| Sbjct 9728540 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 9728599 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| |||||||| ||||| || || || ||||| || ||||| || || ||||||||| Sbjct 9728600 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATGCA 9728659 Query 16379 ACCAATC 16385 |||| || Sbjct 9728660 ACCACTC 9728666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500980651600