Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq48 95.1 1e-14
seq71 93.3 4e-14
seq8 89.7 5e-13
>seq48
Length=16487017
Score = 95.1 bits (104), Expect = 1e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986
||||||| ||| |||| | |||||||| | |||||||| |||||||| || ||||| |
Sbjct 7780099 TTGACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCC 7780040
Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTG 16028
|||| | || ||||| |||||||||||||| || |||| ||
Sbjct 7780039 CTTCCAGAGAGATATTCTCCATAAAATCAAATGGGTTTTCTG 7779998
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
|||||||| || ||||||||| || || || | |||||||||||| ||||| || |
Sbjct 7772403 TTTCTTTGGGGTCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 7772344
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
| ||||| || || ||||| ||||| || || | |||||| | ||| ||||||||
Sbjct 7772343 TTTCCATAGCAATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTC 7772289
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || ||||| || | || || ||||| || | || ||||||| |||||||| ||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || |||||||| || ||||| ||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719
Query 16379 AC 16380
||
Sbjct 7775718 AC 7775717
>seq71
Length=13082442
Score = 93.3 bits (102), Expect = 4e-14
Identities = 68/79 (86%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006
|||||||| || |||||||| |||||||| || |||| ||||||||||||||||| |||
Sbjct 3041102 TGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTCTCC 3041043
Query 16007 ATAAAATCAAAAGGATTTT 16025
||| | ||||| |||||||
Sbjct 3041042 ATATAGTCAAATGGATTTT 3041024
>seq8
Length=27308231
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945
||||||||| ||| | | || ||||| ||| || | | || |||||||| |
Sbjct 9722090 TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGCCATAACTGCAAAACG 9722149
Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005
|| ||||| || || |||||||| ||||||||||| ||||| | |||||||||||
Sbjct 9722150 CTGGTATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 9722209
Query 16006 CATAAAATCAAAAGGATTTTTTGA 16029
||| |||||||| ||||| | |||
Sbjct 9722210 CATGAAATCAAAGGGATTATCTGA 9722233
Score = 86.0 bits (94), Expect = 6e-12
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || || || || || || ||||| || |||| || |||
Sbjct 9728540 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 9728599
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| |||||||| ||||| || || || ||||| || ||||| || || |||||||||
Sbjct 9728600 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATGCA 9728659
Query 16379 ACCAATC 16385
|||| ||
Sbjct 9728660 ACCACTC 9728666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462500980651600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |