Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq184 686 0.0
seq141 93.3 3e-14
>seq184
Length=6300831
Score = 686 bits (760), Expect = 0.0
Identities = 840/1141 (74%), Gaps = 4/1141 (0%)
Strand=Plus/Minus
Query 107498 CCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGA 107557
|||||| |||| | | |||| |||||| |||| ||| |||||| ||||| | | ||
Sbjct 4259599 CCTGAAACTGCTACCCAAGAACTCCATCGACTGCTCTCTGATCACCAGAGGGAATCCCGA 4259540
Query 107558 AGCAGTGGTCCAGGCCCTCCTAGA-CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCA 107616
|| |||| |||||| ||| || ||| |||| ||| ||| || |||||| |
Sbjct 4259539 TGCTGTGGCCCAGGCAA-CCTTGATCAAGTTGGAGAAAAAGTTAAAAAGGGAGCCTCTGA 4259481
Query 107617 CTGGCACCTATTACCTCAACATAAC-CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAG 107675
||| | | || |||||||| || ||| ||||||| | ||||| |||| || |
Sbjct 4259480 CTGAAGCTCAATATCTCAACATGACTCAG-GACTGTGCTCACTTCAGGGCCAGTCAGAGG 4259422
Query 107676 TTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTG 107735
||||| ||||| |||||||| || || ||| |||||||||||||| || || ||||||
Sbjct 4259421 TTCATTCAGTTTCCACTGAGCAAGGAGGAGGAGGACTTCCCCATTGCATATTCAATGGTG 4259362
Query 107736 GTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAAC 107795
| ||||||||||||||||| ||||| | || || | |||||||||||||| ||||||
Sbjct 4259361 ATTCATGAGAAGATTGAAAATTTTGAGAGACTTCTAAGGGCCGTGTATGCCCCACAGAAC 4259302
Query 107796 ATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCC 107855
|| ||||| |||| |||||| ||||||| |||| | ||||| ||||| |||| |||
Sbjct 4259301 ATCTACTGCATCCATGTGGATCTGAAGTCTTCAGAAGCCTTCAAGGAGGCAGTCAGAGCC 4259242
Query 107856 ATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCC 107915
|||| ||| |||||||| |||||||| |||| | || ||||||| ||||| |||||
Sbjct 4259241 ATTAGTTCATGCTTCCCAAATGTCTTTGTGGCTAAAAATCTGGTCCCAGTGGTGTATGCT 4259182
Query 107916 TCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTG 107975
|||||||||||||| |||||||| |||||||| |||||||| ||||||||||| || |||
Sbjct 4259181 TCCTGGTCCAGAGTACAAGCTGATCTGAACTGCATGGAAGAGTTGCTCCAGAGTTCTGTG 4259122
Query 107976 CCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG 108035
|| ||||| ||| | ||||||| || || || || || ||||||||||||||||| |||
Sbjct 4259121 CCCTGGAAATACCTTTTGAATACCTGTGGTACTGATTTTCCCATAAAGACCAATGCTGAG 4259062
Query 108036 ATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCT 108095
||||| | | ||||| ||||||| || ||||| |||||||| || || |||| ||
Sbjct 4259061 ATGGTGAGGTCTCTCAAAGTGTTGAATGGGAAGAATAGTATGGAATCAGAAATACCCACT 4259002
Query 108096 GAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACC 108155
| | ||||||| | ||||||||||| | |||||||| | || | | | | |||
Sbjct 4259001 AATTACAAAAAAGAGCGCTGGAAATATCATTATGAGGTCAAGGATAAGATATTCTGGACC 4258942
Query 108156 AGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215
| | || ||| |||| || | || |||||||||||||||||||||||| ||
Sbjct 4258941 AAAACAATAAAGACGACTCCGCCCCACGGCTTGCCCATGTTCACAGGGAATGCCTATATT 4258882
Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275
||||| || || | |||| ||||||| |||| | ||||| | | |||| || |
Sbjct 4258881 GTGGCTTCCCGGGACTTTATCCAACACCTCTTTAAGAACCCAGATGCTCAAAAGTTGATA 4258822
Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335
|| ||||| || |||||||||||||| || ||||| ||||||||||| || || ||
Sbjct 4258821 GAGTGGGTGAAGGACACCTATAGCCCTGATGAACATCTCTGGGCCACTCTCCATCGGATG 4258762
Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395
|| ||||||||||||||||| || ||| ||||| || | ||| ||| | | ||||
Sbjct 4258761 CCCTGGATGCCTGGCTCTGTACCCTACCATGAAAAGTACCATACCTCGGACCTAAATGCC 4258702
Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455
|| ||| || | || |||||||| | | | || ||| |||| | |||| || |||
Sbjct 4258701 ATTGCCCGGTTTGTGAAGTGGCAAGGCTATGGTGGTGATATCAGAAAGGGGCACCCCTAT 4258642
Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515
| | ||| |||||| | | | | ||| | | || | || ||||| || |||||| |
Sbjct 4258641 CCCCTTTGCACTGGAACCTACCAGCGGGGCGTTTGTGTGTATGGGGCTGGAGACCTGCAT 4258582
Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575
| || |||| | || || || |||| |||||||||||||||| ||| ||||| ||
Sbjct 4258581 TTTATGCTCCGAAGTCACCATCTGCTGGCCAACAAGTTTGACCCGAAGGTAGATGACAAT 4258522
Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGA 108635
| || |||||| | ||||| || || || | || ||||| ||||||| || || |||
Sbjct 4258521 GCACTCCAGTGCCTGGAAGAATATCTGCGATACAAAGCCATTTATGGGAGGGAGCTCTGA 4258462
Query 108636 G 108636
|
Sbjct 4258461 G 4258461
>seq141
Length=8328668
Score = 93.3 bits (102), Expect = 3e-14
Identities = 208/307 (68%), Gaps = 14/307 (5%)
Strand=Plus/Minus
Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCC 107787
||||| | ||| || | |||||| |||||| |||| | | || || || |||||
Sbjct 3449064 ATGGTTATTCATAAGGATTTTGAAACCTTTGAGAGGCTCTTCAGGGCGGTTTACATGCCC 3449005
Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCG 107846
| | || | |||||||| |||||||||| |||| | |||| || ||| |||| ||
Sbjct 3449004 C--AAAATGTTTACTGTGTTCACGTGGATGAGAAGACTACAGATGAGTTT-AAAGGCGCT 3448948
Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906
|| || | | ||||||||||||||| ||| | ||| ||||||| || ||
Sbjct 3448947 GTGGAGTGGTTGGTGGGCTGCTTCCCCAATGTTTTCCTTGCCTCCAAGTTGGAGCCTGTT 3448888
Query 107907 GTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC----TTGCT 107962
||||||| | ||||| | || |||||||||||||| ||| ||||| | ||
Sbjct 3448887 GTTTATGGCGGAATATCCAGGCTCCAGGCTGACCTGAACTGCATGAAAGACCTTGTAGCC 3448828
Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022
| ||| || | ||||||||| | | || || || ||| ||| ||||| | ||
Sbjct 3448827 TCTGAG----GTTCAGTGGAAGTACATTATTAACACTTGTGGGCAAGATTTCCCTCTGAA 3448772
Query 108023 GACCAAT 108029
||||||
Sbjct 3448771 AACCAAT 3448765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348260709933444
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |