Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq184 686 0.0 seq141 93.3 3e-14 >seq184 Length=6300831 Score = 686 bits (760), Expect = 0.0 Identities = 840/1141 (74%), Gaps = 4/1141 (0%) Strand=Plus/Minus Query 107498 CCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGA 107557 |||||| |||| | | |||| |||||| |||| ||| |||||| ||||| | | || Sbjct 4259599 CCTGAAACTGCTACCCAAGAACTCCATCGACTGCTCTCTGATCACCAGAGGGAATCCCGA 4259540 Query 107558 AGCAGTGGTCCAGGCCCTCCTAGA-CAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCA 107616 || |||| |||||| ||| || ||| |||| ||| ||| || |||||| | Sbjct 4259539 TGCTGTGGCCCAGGCAA-CCTTGATCAAGTTGGAGAAAAAGTTAAAAAGGGAGCCTCTGA 4259481 Query 107617 CTGGCACCTATTACCTCAACATAAC-CAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAG 107675 ||| | | || |||||||| || ||| ||||||| | ||||| |||| || | Sbjct 4259480 CTGAAGCTCAATATCTCAACATGACTCAG-GACTGTGCTCACTTCAGGGCCAGTCAGAGG 4259422 Query 107676 TTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTG 107735 ||||| ||||| |||||||| || || ||| |||||||||||||| || || |||||| Sbjct 4259421 TTCATTCAGTTTCCACTGAGCAAGGAGGAGGAGGACTTCCCCATTGCATATTCAATGGTG 4259362 Query 107736 GTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAAC 107795 | ||||||||||||||||| ||||| | || || | |||||||||||||| |||||| Sbjct 4259361 ATTCATGAGAAGATTGAAAATTTTGAGAGACTTCTAAGGGCCGTGTATGCCCCACAGAAC 4259302 Query 107796 ATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCC 107855 || ||||| |||| |||||| ||||||| |||| | ||||| ||||| |||| ||| Sbjct 4259301 ATCTACTGCATCCATGTGGATCTGAAGTCTTCAGAAGCCTTCAAGGAGGCAGTCAGAGCC 4259242 Query 107856 ATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCC 107915 |||| ||| |||||||| |||||||| |||| | || ||||||| ||||| ||||| Sbjct 4259241 ATTAGTTCATGCTTCCCAAATGTCTTTGTGGCTAAAAATCTGGTCCCAGTGGTGTATGCT 4259182 Query 107916 TCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTG 107975 |||||||||||||| |||||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 4259181 TCCTGGTCCAGAGTACAAGCTGATCTGAACTGCATGGAAGAGTTGCTCCAGAGTTCTGTG 4259122 Query 107976 CCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAG 108035 || ||||| ||| | ||||||| || || || || || ||||||||||||||||| ||| Sbjct 4259121 CCCTGGAAATACCTTTTGAATACCTGTGGTACTGATTTTCCCATAAAGACCAATGCTGAG 4259062 Query 108036 ATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCT 108095 ||||| | | ||||| ||||||| || ||||| |||||||| || || |||| || Sbjct 4259061 ATGGTGAGGTCTCTCAAAGTGTTGAATGGGAAGAATAGTATGGAATCAGAAATACCCACT 4259002 Query 108096 GAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACC 108155 | | ||||||| | ||||||||||| | |||||||| | || | | | | ||| Sbjct 4259001 AATTACAAAAAAGAGCGCTGGAAATATCATTATGAGGTCAAGGATAAGATATTCTGGACC 4258942 Query 108156 AGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 | | || ||| |||| || | || |||||||||||||||||||||||| || Sbjct 4258941 AAAACAATAAAGACGACTCCGCCCCACGGCTTGCCCATGTTCACAGGGAATGCCTATATT 4258882 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTT 108275 ||||| || || | |||| ||||||| |||| | ||||| | | |||| || | Sbjct 4258881 GTGGCTTCCCGGGACTTTATCCAACACCTCTTTAAGAACCCAGATGCTCAAAAGTTGATA 4258822 Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || ||||| || |||||||||||||| || ||||| ||||||||||| || || || Sbjct 4258821 GAGTGGGTGAAGGACACCTATAGCCCTGATGAACATCTCTGGGCCACTCTCCATCGGATG 4258762 Query 108336 CCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 || ||||||||||||||||| || ||| ||||| || | ||| ||| | | |||| Sbjct 4258761 CCCTGGATGCCTGGCTCTGTACCCTACCATGAAAAGTACCATACCTCGGACCTAAATGCC 4258702 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 || ||| || | || |||||||| | | | || ||| |||| | |||| || ||| Sbjct 4258701 ATTGCCCGGTTTGTGAAGTGGCAAGGCTATGGTGGTGATATCAGAAAGGGGCACCCCTAT 4258642 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | | ||| |||||| | | | | ||| | | || | || ||||| || |||||| | Sbjct 4258641 CCCCTTTGCACTGGAACCTACCAGCGGGGCGTTTGTGTGTATGGGGCTGGAGACCTGCAT 4258582 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575 | || |||| | || || || |||| |||||||||||||||| ||| ||||| || Sbjct 4258581 TTTATGCTCCGAAGTCACCATCTGCTGGCCAACAAGTTTGACCCGAAGGTAGATGACAAT 4258522 Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGA 108635 | || |||||| | ||||| || || || | || ||||| ||||||| || || ||| Sbjct 4258521 GCACTCCAGTGCCTGGAAGAATATCTGCGATACAAAGCCATTTATGGGAGGGAGCTCTGA 4258462 Query 108636 G 108636 | Sbjct 4258461 G 4258461 >seq141 Length=8328668 Score = 93.3 bits (102), Expect = 3e-14 Identities = 208/307 (68%), Gaps = 14/307 (5%) Strand=Plus/Minus Query 107730 ATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCC 107787 ||||| | ||| || | |||||| |||||| |||| | | || || || ||||| Sbjct 3449064 ATGGTTATTCATAAGGATTTTGAAACCTTTGAGAGGCTCTTCAGGGCGGTTTACATGCCC 3449005 Query 107788 CTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCG 107846 | | || | |||||||| |||||||||| |||| | |||| || ||| |||| || Sbjct 3449004 C--AAAATGTTTACTGTGTTCACGTGGATGAGAAGACTACAGATGAGTTT-AAAGGCGCT 3448948 Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 || || | | ||||||||||||||| ||| | ||| ||||||| || || Sbjct 3448947 GTGGAGTGGTTGGTGGGCTGCTTCCCCAATGTTTTCCTTGCCTCCAAGTTGGAGCCTGTT 3448888 Query 107907 GTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC----TTGCT 107962 ||||||| | ||||| | || |||||||||||||| ||| ||||| | || Sbjct 3448887 GTTTATGGCGGAATATCCAGGCTCCAGGCTGACCTGAACTGCATGAAAGACCTTGTAGCC 3448828 Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 | ||| || | ||||||||| | | || || || ||| ||| ||||| | || Sbjct 3448827 TCTGAG----GTTCAGTGGAAGTACATTATTAACACTTGTGGGCAAGATTTCCCTCTGAA 3448772 Query 108023 GACCAAT 108029 |||||| Sbjct 3448771 AACCAAT 3448765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348260709933444