Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq36 345 3e-90 seq208 82.4 6e-11 >seq36 Length=18184789 Score = 345 bits (382), Expect = 3e-90 Identities = 540/769 (70%), Gaps = 4/769 (1%) Strand=Plus/Minus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || | ||||| ||||| ||||| | || || ||| | || Sbjct 7686576 GACCGCACGGGCACCGGCACCGTGTCTGTGTTTGGCTTGCAAGCCCGCTACAACCTCCGA 7686517 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||| ||||| || | || || || || || || ||||| || || | || ||| | Sbjct 7686516 GATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTG 7686457 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | ||||||||||| || || |||||| ||| ||||| | |||||||| || || Sbjct 7686456 CTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATC 7686397 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACA-GCAATGGATTTGACAACC-GTCAAG 20215 ||| ||| |||||||| | ||||| ||| ||| || || || ||| | | | Sbjct 7686396 TGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGG--TTCACTACCAGAGAGG 7686339 Query 20216 AGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTG 20275 | || |||||||| || |||||||| || || |||||||||||||| || ||||| | Sbjct 7686338 AAGGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAG 7686279 Query 20276 ACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAA 20335 | ||||| ||| |||||| |||||||||||| |||||| ||||||| || ||| | || Sbjct 7686278 AGATGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAA 7686219 Query 20336 TTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGC 20395 | ||||| || || | |||||||| || ||| | || || ||||| |||||||| | | Sbjct 7686218 TCAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTC 7686159 Query 20396 CTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAAT 20455 || | ||||| || |||||||| || || || || || || || ||| ||| Sbjct 7686158 CTCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGC 7686099 Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515 | || ||||| | || || ||||| | |||||||| || || || || ||||| |||| Sbjct 7686098 TTTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTG 7686039 Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACT 20575 | ||||| | ||||| || || |||||||| ||||| |||| | || | ||||| | Sbjct 7686038 CCAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATT 7685979 Query 20576 TAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTAC 20635 | || ||||| | ||||| || ||||| ||| | |||||||| | || | ||| | | Sbjct 7685978 TTGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATTC 7685919 Query 20636 AGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATA 20695 || | ||| |||||| || ||||| | || | ||| |||| || |||| | Sbjct 7685918 AGCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAAAGCCA 7685859 Query 20696 TTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744 || | ||||| || ||||| || || || | |||| ||||| || || Sbjct 7685858 TTGATGATTTCAAGGCTGAGGACTTCCTGATTGAAGACTATAACCCTCA 7685810 >seq208 Length=5466430 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/176 (72%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 20113 GGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGA 20172 || || |||||| ||| ||||| | |||||||| || || ||| ||| ||||| Sbjct 1460093 GGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATCTGGGACGCCAATGGA 1460152 Query 20173 TCTAAGCAATTTTTACACA-GCAATGGATTTGACAACC-GTCAAGAGGGGGATTTGGGTC 20230 ||| | ||||| ||| ||| || || || ||| | | || || |||||||| | Sbjct 1460153 TCTCGAGACTTTTTGGACAAGCAGGGG--TTCACTACCAGAGAGGAAGGAGATTTGGGAC 1460210 Query 20231 CTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286 |||| ||||| || || |||||||||||||| || ||||| || ||||||||| Sbjct 1460211 CTGTATATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATGAACACA 1460266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399174727205170