Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq36 345 3e-90
seq208 82.4 6e-11
>seq36
Length=18184789
Score = 345 bits (382), Expect = 3e-90
Identities = 540/769 (70%), Gaps = 4/769 (1%)
Strand=Plus/Minus
Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037
|| || || || || || || | ||||| ||||| ||||| | || || ||| | ||
Sbjct 7686576 GACCGCACGGGCACCGGCACCGTGTCTGTGTTTGGCTTGCAAGCCCGCTACAACCTCCGA 7686517
Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097
|||| ||||| || | || || || || || || ||||| || || | || ||| |
Sbjct 7686516 GATGAGTTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTG 7686457
Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157
| ||||||||||| || || |||||| ||| ||||| | |||||||| || ||
Sbjct 7686456 CTGTGGTTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATC 7686397
Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACA-GCAATGGATTTGACAACC-GTCAAG 20215
||| ||| |||||||| | ||||| ||| ||| || || || ||| | | |
Sbjct 7686396 TGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGG--TTCACTACCAGAGAGG 7686339
Query 20216 AGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTG 20275
| || |||||||| || |||||||| || || |||||||||||||| || ||||| |
Sbjct 7686338 AAGGAGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAG 7686279
Query 20276 ACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAA 20335
| ||||| ||| |||||| |||||||||||| |||||| ||||||| || ||| | ||
Sbjct 7686278 AGATGAATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAA 7686219
Query 20336 TTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGC 20395
| ||||| || || | |||||||| || ||| | || || ||||| |||||||| | |
Sbjct 7686218 TCAAAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTC 7686159
Query 20396 CTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAAT 20455
|| | ||||| || |||||||| || || || || || || || ||| |||
Sbjct 7686158 CTCTGATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGC 7686099
Query 20456 TGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTG 20515
| || ||||| | || || ||||| | |||||||| || || || || ||||| ||||
Sbjct 7686098 TTTCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTG 7686039
Query 20516 CAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACT 20575
| ||||| | ||||| || || |||||||| ||||| |||| | || | ||||| |
Sbjct 7686038 CCAGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATT 7685979
Query 20576 TAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTAC 20635
| || ||||| | ||||| || ||||| ||| | |||||||| | || | ||| | |
Sbjct 7685978 TTGTACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATTC 7685919
Query 20636 AGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATA 20695
|| | ||| |||||| || ||||| | || | ||| |||| || |||| |
Sbjct 7685918 AGCTTCAGCGAGAACCAAGACCTTTCCCTAAGCTCAGAATTCTTCGAGAAGTCAAAGCCA 7685859
Query 20696 TTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCA 20744
|| | ||||| || ||||| || || || | |||| ||||| || ||
Sbjct 7685858 TTGATGATTTCAAGGCTGAGGACTTCCTGATTGAAGACTATAACCCTCA 7685810
>seq208
Length=5466430
Score = 82.4 bits (90), Expect = 6e-11
Identities = 126/176 (72%), Gaps = 4/176 (2%)
Strand=Plus/Plus
Query 20113 GGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGA 20172
|| || |||||| ||| ||||| | |||||||| || || ||| ||| |||||
Sbjct 1460093 GGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATCTGGGACGCCAATGGA 1460152
Query 20173 TCTAAGCAATTTTTACACA-GCAATGGATTTGACAACC-GTCAAGAGGGGGATTTGGGTC 20230
||| | ||||| ||| ||| || || || ||| | | || || |||||||| |
Sbjct 1460153 TCTCGAGACTTTTTGGACAAGCAGGGG--TTCACTACCAGAGAGGAAGGAGATTTGGGAC 1460210
Query 20231 CTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACA 20286
|||| ||||| || || |||||||||||||| || ||||| || |||||||||
Sbjct 1460211 CTGTATATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATGAACACA 1460266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399174727205170
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |