Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq71 132 5e-26 seq48 123 2e-23 >seq71 Length=13082442 Score = 132 bits (146), Expect = 5e-26 Identities = 259/373 (69%), Gaps = 21/373 (6%) Strand=Plus/Minus Query 14185 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 14244 ||| ||||| || ||| | || | || |||| | | | ||||||| |||||||||| Sbjct 3040084 TAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAG 3040025 Query 14245 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 14304 ||| || ||||| | ||| || |||| || || ||| || | ||| ||||| | | Sbjct 3040024 TTCATTGGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGT 3039968 Query 14305 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14364 ||| || | |||||| ||||| ||||| || ||||| |||| | | ||| ||| | Sbjct 3039967 GAAAGAATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATA 3039911 Query 14365 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA-TTCAGAtttttttttAATAAAAT 14423 | ||||| |||| | |||| || ||| || | ||| ||| ||||||| | || Sbjct 3039910 TGTTGCTTCTTTG-----TCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858 Query 14424 CCATTGTTTCAATAGCATTAAATAAATGTTCC-TTCTCTTTAGTACTTGAAATGTATGTA 14482 | ||||||||| |||| || | | |||| |||| || ||| ||| ||| || || Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAATTCCTTTCTTTTGAGT-CTT-TAATATAAGTG 3039800 Query 14483 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14542 |||||||| | | ||||||||||| || |||||||| | | || || || ||||| Sbjct 3039799 TCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAG 3039744 Query 14543 AAACATCTAGCTT 14555 ||||| | |||| Sbjct 3039743 AAACAGCAGGCTT 3039731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||| || ||||| || |||||||||||| |||| ||||| | ||| ||||| ||| Sbjct 3041102 TGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTCTCC 3041043 Query 13976 ATAAAATCAAATGGATTT 13993 ||| | |||||||||||| Sbjct 3041042 ATATAGTCAAATGGATTT 3041025 >seq48 Length=16487017 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||||||||||||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| ||||| || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 7775720 CTACAACACGTTCGCC 7775705 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || |||||| | |||||||| | ||||| || ||||||||||| ||||| ||| Sbjct 7780097 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 7780038 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 ||||| || ||||| ||||||||||||||||| ||| Sbjct 7780037 TCCAGAGAGATATTCTCCATAAAATCAAATGGGTTT 7780002 Score = 93.3 bits (102), Expect = 4e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 ||| || || |||||||| | |||||||||||||| ||||||||||||||||| || || Sbjct 7772387 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 7772328 Query 14533 AAAACCATAAAAACATCTAGCTTC 14556 ||| ||||| ||||| | |||||| Sbjct 7772327 AAAGCCATAGAAACAGCGAGCTTC 7772304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482334108116080