Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq118 100 3e-16
seq179 91.5 1e-13
seq103 86.0 6e-12
seq85 86.0 6e-12
seq23 86.0 6e-12
>seq118
Length=9585089
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || || || ||||| ||||||||||| || |||||| | || || || ||
Sbjct 4429462 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 4429521
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | |||| | ||||| | || ||||||||| ||| | || || |||||
Sbjct 4429522 TGACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 4429581
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || || || ||||| ||| ||||||| | || || || || ||
Sbjct 4429582 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCAGAACCCTGTCTGACTACAA 4429641
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || ||||| || | |||||||| ||
Sbjct 4429642 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTACGCCTGAGGGGTGG 4429689
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC-GT 31250
|||||| || || || ||||| ||||||||||| || |||||| | || || || || ||
Sbjct 4429918 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCAGT 4429977
Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310
|||| | |||| | ||||| | || ||||||||| ||| | || || ||||
Sbjct 4429978 --GACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCCCTGACC 4430034
Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370
||||| | || || || || ||||| ||| ||||||| | || || || || |
Sbjct 4430035 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCAGAACCCTGTCTGACTACA 4430094
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|||| || || || || || || || ||||| || | |||||||| ||
Sbjct 4430095 ACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 4430143
>seq179
Length=6459238
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
|||||| ||||| || |||||||| || || || || | |||||| || || || ||
Sbjct 3627921 CACCTCATCTTTACTAGTATACTCTACTATCTCTGTGCACAAATTGCTGCATTTGATGGT 3627980
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
|||| || ||| |||||||| ||||| || || |||||||||||||| || ||
Sbjct 3627981 TCCCAGGTTCTGCTGATTGCTTTTCCGATTACAGCTGTCTTTGTAGAGCATGTAAGGGGT 3628040
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|| ||||| ||| ||||| ||||| || |||||
Sbjct 3628041 CCCTGTCTCCGTCTGAGACTCAATGATGGCATACCACA 3628078
>seq103
Length=10584223
Score = 86.0 bits (94), Expect = 6e-12
Identities = 157/228 (69%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| ||||| || |||||| | || || || ||
Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| ||| | ||||| |||||| | || |||||||||
Sbjct 9901339 GACACCATTGAGAATGTCAAA---AGA-TCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9901394
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | | || || || || || ||| ||||||| | || || || || |||
Sbjct 9901395 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901454
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|| || |||||||| ||||| || |||| || | ||||||| |||
Sbjct 9901455 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 9901502
>seq85
Length=11587828
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||||||||| || ||||| | || ||||||||
Sbjct 256373 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACTCTTGAGGTTGAACCCAGT 256432
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| | |||||| | ||| ||| |||||||| | || || || |||
Sbjct 256433 GATACTATCGAGAATGTCAAAGCCAAAATCCAGGAAAAGGAAGGTATCCCACCAGATCAG 256492
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
| ||||| || || ||||| |||||| | |||||
Sbjct 256493 TAACGTCTGATTTTTGCTGGAAAACAGCTAGAAGA 256527
>seq23
Length=22081990
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| ||||| || |||||| ||||||| || || |||||| | || || ||||| |||
Sbjct 21845320 ATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTTGAGGTCGAACCATCC 21845261
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
| | | | |||| ||||| | ||| || ||| |||| | || || || ||
Sbjct 21845260 AATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGAAAGGTATTCCCCCTGATCAA 21845201
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA-CTATGAGCGATTATAA 31371
|| | | || || || | ||| || ||| |||| | |||| || || || |||||
Sbjct 21845200 CAAAGATTGATTTTTGCGGACAAGCAATTGAAAGA-TGGATGAACTTTGTCTGACTATAA 21845142
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||||| || || || || ||||| || || || || || || || |||
Sbjct 21845141 CATTCAGAAGGAGTCTACCCTTCACCTTGTTCTGAGGCTTAGTGGTGGT 21845093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445755779615520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |