Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq118 100 3e-16 seq179 91.5 1e-13 seq103 86.0 6e-12 seq85 86.0 6e-12 seq23 86.0 6e-12 >seq118 Length=9585089 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || |||||| | || || || || Sbjct 4429462 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 4429521 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 4429522 TGACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 4429581 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||| ||| ||||||| | || || || || || Sbjct 4429582 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCAGAACCCTGTCTGACTACAA 4429641 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | |||||||| || Sbjct 4429642 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTACGCCTGAGGGGTGG 4429689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC-GT 31250 |||||| || || || ||||| ||||||||||| || |||||| | || || || || || Sbjct 4429918 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCAGT 4429977 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | |||| | ||||| | || ||||||||| ||| | || || |||| Sbjct 4429978 --GACACTATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCCCTGACC 4430034 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || ||||| ||| ||||||| | || || || || | Sbjct 4430035 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCAGAACCCTGTCTGACTACA 4430094 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || || || || || || ||||| || | |||||||| || Sbjct 4430095 ACATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGTGG 4430143 >seq179 Length=6459238 Score = 91.5 bits (100), Expect = 1e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| || |||||||| || || || || | |||||| || || || || Sbjct 3627921 CACCTCATCTTTACTAGTATACTCTACTATCTCTGTGCACAAATTGCTGCATTTGATGGT 3627980 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 |||| || ||| |||||||| ||||| || || |||||||||||||| || || Sbjct 3627981 TCCCAGGTTCTGCTGATTGCTTTTCCGATTACAGCTGTCTTTGTAGAGCATGTAAGGGGT 3628040 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 || ||||| ||| ||||| ||||| || ||||| Sbjct 3628041 CCCTGTCTCCGTCTGAGACTCAATGATGGCATACCACA 3628078 >seq103 Length=10584223 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| ||||| || |||||| | || || || || Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| ||| | ||||| |||||| | || ||||||||| Sbjct 9901339 GACACCATTGAGAATGTCAAA---AGA-TCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9901394 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || ||| ||||||| | || || || || ||| Sbjct 9901395 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901454 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || |||||||| ||||| || |||| || | ||||||| ||| Sbjct 9901455 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 9901502 >seq85 Length=11587828 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||||||||| || ||||| | || |||||||| Sbjct 256373 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACTATCACTCTTGAGGTTGAACCCAGT 256432 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | |||||| | ||| ||| |||||||| | || || || ||| Sbjct 256433 GATACTATCGAGAATGTCAAAGCCAAAATCCAGGAAAAGGAAGGTATCCCACCAGATCAG 256492 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | ||||| || || ||||| |||||| | ||||| Sbjct 256493 TAACGTCTGATTTTTGCTGGAAAACAGCTAGAAGA 256527 >seq23 Length=22081990 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||| ||||||| || || |||||| | || || ||||| ||| Sbjct 21845320 ATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCCTTGAGGTCGAACCATCC 21845261 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 | | | | |||| ||||| | ||| || ||| |||| | || || || || Sbjct 21845260 AATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGAAAGGTATTCCCCCTGATCAA 21845201 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA-CTATGAGCGATTATAA 31371 || | | || || || | ||| || ||| |||| | |||| || || || ||||| Sbjct 21845200 CAAAGATTGATTTTTGCGGACAAGCAATTGAAAGA-TGGATGAACTTTGTCTGACTATAA 21845142 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| || || || || ||||| || || || || || || || ||| Sbjct 21845141 CATTCAGAAGGAGTCTACCCTTCACCTTGTTCTGAGGCTTAGTGGTGGT 21845093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755779615520