Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq36 150 4e-31 seq208 91.5 3e-13 seq48 89.7 1e-12 >seq36 Length=18184789 Score = 150 bits (166), Expect = 4e-31 Identities = 382/569 (67%), Gaps = 14/569 (2%) Strand=Plus/Minus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 |||| | || || |||||| | ||||||| || || |||| || || ||||| Sbjct 7686509 TTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTGCTGTGGT 7686450 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTG---GCCAAGAAGAAGATACACATCTGGA 35339 | || | ||| ||| | || || || | ||||| || || || | |||||| Sbjct 7686449 TTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAA--AGGAG-TAAAAATCTGGG 7686393 Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGACA-GTAGAGGGTTA-TACGATAGAGCAGAGGG 35397 |||| ||||| || || || |||||||||| | || || | | ||| | |||| || || Sbjct 7686392 ACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAG--GAAGG 7686335 Query 35398 AGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT-ACCT 35456 |||||||||||| || || || ||||| ||| | |||||||| || ||||| | | | Sbjct 7686334 AGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGAT 7686275 Query 35457 GTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGA 35516 | | | |||||| ||||| | || | |||||| | || | | | || | | Sbjct 7686274 GAA-TACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAATCA 7686216 Query 35517 GAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576 | ||||| |||| |||||||| |||||| || |||||||||| ||||||| | Sbjct 7686215 AAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTCCTC 7686156 Query 35577 TTATGGCTCTTCCTCCATGCCAC-ATGACTGCTCAATTTTATGTGGCTAATGGAGAATTG 35635 | ||||| | |||||||||||| | ||| ||| || ||||| ||||| || | Sbjct 7686155 TGATGGCATTACCTCCATGCCACGCTCTCTG-TCAGTTCTATGTATTGAATGGTGAGCTT 7686097 Query 35636 TCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCA 35695 || || ||| | || |||||| |||||| | || | || ||||| ||||| ||||| Sbjct 7686096 TCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTGCC 7686037 Query 35696 TCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTT 35755 ||||| || || || | |||| || | | || || || || || || ||| Sbjct 7686036 AGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATTTT 7685977 Query 35756 ATCCTCACTCTTGGTGACGCACACATTTA 35784 | | |||||| || || || || || || Sbjct 7685976 GTACACACTCTGGGAGATGCTCATATATA 7685948 >seq208 Length=5466430 Score = 91.5 bits (100), Expect = 3e-13 Identities = 93/118 (79%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACA-GTAGAGGGTTA-TACGATAGAG 35390 |||||| |||| ||||| || || || |||||||||| | || || | | ||| | |||| Sbjct 1460135 ATCTGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAG 1460194 Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448 || |||||||||||||| ||||| || ||||| ||| | |||||||| || ||||| Sbjct 1460195 --GAAGGAGATTTGGGACCTGTATATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 1460250 >seq48 Length=16487017 Score = 89.7 bits (98), Expect = 1e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| || ||||| || |||||||||||||||||| |||| | || |||||||| |||| Sbjct 7775715 TTGTAGCTTTTGCAGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCT 7775774 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | ||| | ||||||| | || | |||||||| | ||| ||| | Sbjct 7775775 GGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCCAATGAACTTATTAGTAGAG 7775834 Query 102036 ACGA 102039 | || Sbjct 7775835 ATGA 7775838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989559833740230