Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq36 150 4e-31
seq208 91.5 3e-13
seq48 89.7 1e-12
>seq36
Length=18184789
Score = 150 bits (166), Expect = 4e-31
Identities = 382/569 (67%), Gaps = 14/569 (2%)
Strand=Plus/Minus
Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282
|||| | || || |||||| | ||||||| || || |||| || || |||||
Sbjct 7686509 TTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTGCTGTGGT 7686450
Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTG---GCCAAGAAGAAGATACACATCTGGA 35339
| || | ||| ||| | || || || | ||||| || || || | ||||||
Sbjct 7686449 TTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAA--AGGAG-TAAAAATCTGGG 7686393
Query 35340 ACGCTAATGGGTCGCGGGAATTTTTGGACA-GTAGAGGGTTA-TACGATAGAGCAGAGGG 35397
|||| ||||| || || || |||||||||| | || || | | ||| | |||| || ||
Sbjct 7686392 ACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAG--GAAGG 7686335
Query 35398 AGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT-ACCT 35456
|||||||||||| || || || ||||| ||| | |||||||| || ||||| | | |
Sbjct 7686334 AGATTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGAT 7686275
Query 35457 GTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGA 35516
| | | |||||| ||||| | || | |||||| | || | | | || | |
Sbjct 7686274 GAA-TACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAATCA 7686216
Query 35517 GAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACC 35576
| ||||| |||| |||||||| |||||| || |||||||||| ||||||| |
Sbjct 7686215 AAACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTCCTC 7686156
Query 35577 TTATGGCTCTTCCTCCATGCCAC-ATGACTGCTCAATTTTATGTGGCTAATGGAGAATTG 35635
| ||||| | |||||||||||| | ||| ||| || ||||| ||||| || |
Sbjct 7686155 TGATGGCATTACCTCCATGCCACGCTCTCTG-TCAGTTCTATGTATTGAATGGTGAGCTT 7686097
Query 35636 TCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCA 35695
|| || ||| | || |||||| |||||| | || | || ||||| ||||| |||||
Sbjct 7686096 TCTTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTGCC 7686037
Query 35696 TCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTT 35755
||||| || || || | |||| || | | || || || || || || |||
Sbjct 7686036 AGTTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATTTT 7685977
Query 35756 ATCCTCACTCTTGGTGACGCACACATTTA 35784
| | |||||| || || || || || ||
Sbjct 7685976 GTACACACTCTGGGAGATGCTCATATATA 7685948
>seq208
Length=5466430
Score = 91.5 bits (100), Expect = 3e-13
Identities = 93/118 (79%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACA-GTAGAGGGTTA-TACGATAGAG 35390
|||||| |||| ||||| || || || |||||||||| | || || | | ||| | ||||
Sbjct 1460135 ATCTGGGACGCCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAG 1460194
Query 35391 CAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATA 35448
|| |||||||||||||| ||||| || ||||| ||| | |||||||| || |||||
Sbjct 1460195 --GAAGGAGATTTGGGACCTGTATATGGCTTCCAGTGGAGACATTTTGGGGCAGAATA 1460250
>seq48
Length=16487017
Score = 89.7 bits (98), Expect = 1e-12
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||| || ||||| || |||||||||||||||||| |||| | || |||||||| ||||
Sbjct 7775715 TTGTAGCTTTTGCAGCTGTTGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCT 7775774
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035
|| ||||||| | ||| | ||||||| | || | |||||||| | ||| ||| |
Sbjct 7775775 GGCTCAAGAAACGAGGTTTAATGCCTGGATTAACTTTTTCCAATGAACTTATTAGTAGAG 7775834
Query 102036 ACGA 102039
| ||
Sbjct 7775835 ATGA 7775838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989559833740230
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |