Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq71 154 2e-32
seq179 114 2e-20
seq48 105 8e-18
seq38 98.7 1e-15
seq8 82.4 1e-10
>seq71
Length=13082442
Score = 154 bits (170), Expect = 2e-32
Identities = 330/479 (69%), Gaps = 22/479 (5%)
Strand=Plus/Minus
Query 33560 TAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAAT 33619
||||| ||||| ||||| | || | ||| | |||| | || ||| ||| |||||||
Sbjct 3040087 TAATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAAT 3040028
Query 33620 TAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33679
| ||| || ||||| | | || |||||| || || || ||||| ||||| ||
Sbjct 3040027 AAGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGA 3039971
Query 33680 AGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33739
| ||| || | ||||||| ||||||| || || |||||||| | | | || ||
Sbjct 3039970 TGTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACC 3039914
Query 33740 ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAG 33798
||| | ||| ||| |||| | ||| || || || |||||||| |||||||
Sbjct 3039913 ATAT--GTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858
Query 33799 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 33858
| | ||||| ||| |||| |||||| | || |||| || ||||||| |||||| |
Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGT 3039799
Query 33859 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33918
| || | |||||| |||||| ||||| ||||||| ||| || || || || ||||
Sbjct 3039798 CAATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGA 3039743
Query 33919 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 33978
|||| | || | ||| ||||| | || | | | | | | | || ||| |||| |
Sbjct 3039742 AACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTA 3039684
Query 33979 CTATTCCATCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 34033
|| | ||||| ||| |||||||| || ||||||||||| | |||| |||||| ||||
Sbjct 3039683 CTCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626
>seq179
Length=6459238
Score = 114 bits (126), Expect = 2e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| |||| ||||| ||||| ||||| || ||||| || ||||| |
Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||||
Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985
Query 62508 CTATTTCT 62515
|| |||||
Sbjct 3619986 CTGTTTCT 3619993
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678
|| ||| ||||||| |||||||| || | || | || | | ||| || || || ||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113
Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738
|| || |||||||||||||| ||||||| |||||||| || ||||| || || |||
Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173
Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798
|| ||||| | | || ||||| || || |||| || || || |||||||| || ||
Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233
Query 62799 CTATGTCTCTTATTAGA 62815
| ||| | ||||| ||
Sbjct 3625234 CGATGACGTTTATTTGA 3625250
Score = 100 bits (110), Expect = 4e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710
||| |||| | || || |||||||| | || || ||||| || ||||||||| | |||
Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287
Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770
|| || || ||||| || |||||||| | || |||||| || ||||| || || |
Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347
Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCA 63800
|| | ||||| |||||||||||| | ||||
Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326
|| ||||||||||||||||| || ||||| || || | ||| ||||| || | || ||
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386
|| || || || || ||||| || ||||| || || | | ||| || | ||||| |||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 63387 TCCAAGTATATGGC 63400
|||||||| |||||
Sbjct 3630708 TCCAAGTAGATGGC 3630721
>seq48
Length=16487017
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||||||||| | ||| || ||||| || | ||| ||||||| || || || |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| |||||||| || || || || ||||||||||||||||| || || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 33724 C 33724
|
Sbjct 7775720 C 7775720
Score = 95.1 bits (104), Expect = 2e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902
|| |||| |||||| || || | |||||||||||||| ||||| |||||||| || ||
Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333
Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| ||||| || |||||||| | ||| || || ||||| ||||||
Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288
>seq38
Length=18080598
Score = 98.7 bits (108), Expect = 1e-15
Identities = 93/119 (78%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|| || |||||||||| | | | ||| | |||||||| ||||||||||||||||| |||
Sbjct 12171371 GTGACATTCTATGATGTGTATGTTGTTCTGCAAGCTTTTATGTTGACTACTGCAGTATTT 12171312
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
| | | ||||| || ||| |||| || |||||||||||||| ||| ||| | ||||
Sbjct 12171311 TTCGGTTTGACTCTATACACTTTACAGTCCAAGAGAGATTTCAGCAAATTTGGAGCAGG 12171253
>seq8
Length=27308231
Score = 82.4 bits (90), Expect = 1e-10
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|| ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| ||
Sbjct 9743409 ACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGGA 9743468
Query 34140 TATTGGATTGGGAAAATAACAAATC 34164
|| || ||||| ||||| |||||||
Sbjct 9743469 TACTGAATTGGAAAAATGACAAATC 9743493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629802594595680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |