Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq71 154 2e-32 seq179 114 2e-20 seq48 105 8e-18 seq38 98.7 1e-15 seq8 82.4 1e-10 >seq71 Length=13082442 Score = 154 bits (170), Expect = 2e-32 Identities = 330/479 (69%), Gaps = 22/479 (5%) Strand=Plus/Minus Query 33560 TAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAAT 33619 ||||| ||||| ||||| | || | ||| | |||| | || ||| ||| ||||||| Sbjct 3040087 TAATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAAT 3040028 Query 33620 TAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33679 | ||| || ||||| | | || |||||| || || || ||||| ||||| || Sbjct 3040027 AAGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGA 3039971 Query 33680 AGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33739 | ||| || | ||||||| ||||||| || || |||||||| | | | || || Sbjct 3039970 TGTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACC 3039914 Query 33740 ATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAG 33798 ||| | ||| ||| |||| | ||| || || || |||||||| ||||||| Sbjct 3039913 ATAT--GTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858 Query 33799 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTAT 33858 | | ||||| ||| |||| |||||| | || |||| || ||||||| |||||| | Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGT 3039799 Query 33859 CGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 33918 | || | |||||| |||||| ||||| ||||||| ||| || || || || |||| Sbjct 3039798 CAATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGA 3039743 Query 33919 AACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 33978 |||| | || | ||| ||||| | || | | | | | | | || ||| |||| | Sbjct 3039742 AACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTA 3039684 Query 33979 CTATTCCATCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 34033 || | ||||| ||| |||||||| || ||||||||||| | |||| |||||| |||| Sbjct 3039683 CTCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626 >seq179 Length=6459238 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985 Query 62508 CTATTTCT 62515 || ||||| Sbjct 3619986 CTGTTTCT 3619993 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| ||||||| |||||||| || | || | || | | ||| || || || || Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || |||||||||||||| ||||||| |||||||| || ||||| || || ||| Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | || ||||| || || |||| || || || |||||||| || || Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 3625234 CGATGACGTTTATTTGA 3625250 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 ||| |||| | || || |||||||| | || || ||||| || ||||||||| | ||| Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || || || ||||| || |||||||| | || |||||| || ||||| || || | Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCA 63800 || | ||||| |||||||||||| | |||| Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 || ||||||||||||||||| || ||||| || || | ||| ||||| || | || || Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || || ||||| || ||||| || || | | ||| || | ||||| ||| Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707 Query 63387 TCCAAGTATATGGC 63400 |||||||| ||||| Sbjct 3630708 TCCAAGTAGATGGC 3630721 >seq48 Length=16487017 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||||||||| | ||| || ||||| || | ||| ||||||| || || || | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| |||||||| || || || || ||||||||||||||||| || || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 33724 C 33724 | Sbjct 7775720 C 7775720 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||| || |||||||| | ||| || || ||||| |||||| Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288 >seq38 Length=18080598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 || || |||||||||| | | | ||| | |||||||| ||||||||||||||||| ||| Sbjct 12171371 GTGACATTCTATGATGTGTATGTTGTTCTGCAAGCTTTTATGTTGACTACTGCAGTATTT 12171312 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 | | | ||||| || ||| |||| || |||||||||||||| ||| ||| | |||| Sbjct 12171311 TTCGGTTTGACTCTATACACTTTACAGTCCAAGAGAGATTTCAGCAAATTTGGAGCAGG 12171253 >seq8 Length=27308231 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 || ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| || Sbjct 9743409 ACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGGA 9743468 Query 34140 TATTGGATTGGGAAAATAACAAATC 34164 || || ||||| ||||| ||||||| Sbjct 9743469 TACTGAATTGGAAAAATGACAAATC 9743493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629802594595680