Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq71 134 1e-26
seq48 134 1e-26
seq8 111 1e-19
seq179 105 6e-18
>seq71
Length=13082442
Score = 134 bits (148), Expect = 1e-26
Identities = 331/493 (67%), Gaps = 18/493 (4%)
Strand=Plus/Minus
Query 11480 ATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTC 11539
|| ||||| ||||||| |||||||| | || | | ||| | | || || |
Sbjct 3040215 ATGTACTGCTTCATTAAAGTGCAATTCATTCTGATCAACTTCACAGTCAAAGTCACGATT 3040156
Query 11540 AAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599
| |||||||| |||| | || | |||| |||||||| | || ||||| ||
Sbjct 3040155 AGAAACTCCTGTTCTGTTCTAGCAGCATTGATGATTATTCATTTTGCTTTTTCCTCTGAA 3040096
Query 11600 GGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCT 11659
||| ||||| ||||| |||||| | || | || |||| | ||||| || |||
Sbjct 3040095 GGTTTGCTTAATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCT 3040036
Query 11660 CTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAA 11719
|||| || |||||||| ||||| | ||| || |||| || ||| || || | |||
Sbjct 3040035 TTACTAATAAGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAG 3039979
Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779
||||| | | || ||| ||||||||| |||| || ||||||||||| ||||| ||
Sbjct 3039978 AATATCGATGTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACA 3039922
Query 11780 CTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAAT-CAGCTTTCTTTTT 11838
| ||| |||||| ||| | || | |||| || || || | |||||||||||||
Sbjct 3039921 CATTCACCATAT--GTTGCTTCTTTGTCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTT 3039866
Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT-TTTTCTATATTATCTCTTA 11897
|| || | |||||| || | || || | | ||| ||||| | ||| | |
Sbjct 3039865 AACACAAGGTAGTGTTTCAATGCCATTGAAGAGA--AATTCCTTTCTTTTGAGTCTTTAA 3039808
Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957
||| || || || | | || |||||||| ||||| | |||||| | | ||||| |
Sbjct 3039807 TATAAGTGTCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGA 3039752
Query 11958 ATCCATAGAAACA 11970
| |||||||||||
Sbjct 3039751 AGCCATAGAAACA 3039739
>seq48
Length=16487017
Score = 134 bits (148), Expect = 1e-26
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| |||||||| || |||||||| ||||| |||||||| ||||| || |||||||| ||
Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| || ||||||||||| |||
Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||| ||
Sbjct 7775718 ACAACACGTTCGCC 7775705
>seq8
Length=27308231
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| || || || | ||| ||||| | |||| || ||
Sbjct 9728540 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 9728599
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| |||||||||||||| || || || ||||| || || |||||||| ||||||||
Sbjct 9728600 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATGCA 9728659
Query 11774 ACTACTCTTTCTCC 11787
|| |||||||||||
Sbjct 9728660 ACCACTCTTTCTCC 9728673
Score = 93.3 bits (102), Expect = 4e-14
Identities = 75/91 (82%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950
||| | | ||| |||||||||| ||||||||||| ||||||||||| || || |||
Sbjct 9734385 TCTTTGATATAGGTATCTATTAGCAAACTATACATCTCTGAATGAATGTTCTCAATAAGA 9734444
Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTG 11981
|||||||| ||||||||||| || |||||||
Sbjct 9734445 ATTTGAAAGCCATAGAAACAGCGCGCCTCTG 9734475
>seq179
Length=6459238
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || | ||||||| ||||| || ||||| || || |||||||||
Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||| || |||| ||||| ||||| |||||||| || | || |
Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 3619986 CTGTTTCTGATGCCAT 3620001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468513637396640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |