Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq71 134 1e-26 seq48 134 1e-26 seq8 111 1e-19 seq179 105 6e-18 >seq71 Length=13082442 Score = 134 bits (148), Expect = 1e-26 Identities = 331/493 (67%), Gaps = 18/493 (4%) Strand=Plus/Minus Query 11480 ATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTC 11539 || ||||| ||||||| |||||||| | || | | ||| | | || || | Sbjct 3040215 ATGTACTGCTTCATTAAAGTGCAATTCATTCTGATCAACTTCACAGTCAAAGTCACGATT 3040156 Query 11540 AAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGAT 11599 | |||||||| |||| | || | |||| |||||||| | || ||||| || Sbjct 3040155 AGAAACTCCTGTTCTGTTCTAGCAGCATTGATGATTATTCATTTTGCTTTTTCCTCTGAA 3040096 Query 11600 GGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCT 11659 ||| ||||| ||||| |||||| | || | || |||| | ||||| || ||| Sbjct 3040095 GGTTTGCTTAATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCT 3040036 Query 11660 CTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAA 11719 |||| || |||||||| ||||| | ||| || |||| || ||| || || | ||| Sbjct 3040035 TTACTAATAAGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAG 3039979 Query 11720 AATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACT 11779 ||||| | | || ||| ||||||||| |||| || ||||||||||| ||||| || Sbjct 3039978 AATATCGATGTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACA 3039922 Query 11780 CTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCTGGCCCAAT-CAGCTTTCTTTTT 11838 | ||| |||||| ||| | || | |||| || || || | ||||||||||||| Sbjct 3039921 CATTCACCATAT--GTTGCTTCTTTGTCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTT 3039866 Query 11839 TACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT-TTTTCTATATTATCTCTTA 11897 || || | |||||| || | || || | | ||| ||||| | ||| | | Sbjct 3039865 AACACAAGGTAGTGTTTCAATGCCATTGAAGAGA--AATTCCTTTCTTTTGAGTCTTTAA 3039808 Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 ||| || || || | | || |||||||| ||||| | |||||| | | ||||| | Sbjct 3039807 TATAAGTGTCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGA 3039752 Query 11958 ATCCATAGAAACA 11970 | ||||||||||| Sbjct 3039751 AGCCATAGAAACA 3039739 >seq48 Length=16487017 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||||||| || |||||||| ||||| |||||||| ||||| || |||||||| || Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || ||||||||||| ||| Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 7775718 ACAACACGTTCGCC 7775705 >seq8 Length=27308231 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| || || || | ||| ||||| | |||| || || Sbjct 9728540 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 9728599 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| |||||||||||||| || || || ||||| || || |||||||| |||||||| Sbjct 9728600 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATGCA 9728659 Query 11774 ACTACTCTTTCTCC 11787 || ||||||||||| Sbjct 9728660 ACCACTCTTTCTCC 9728673 Score = 93.3 bits (102), Expect = 4e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| | | ||| |||||||||| ||||||||||| ||||||||||| || || ||| Sbjct 9734385 TCTTTGATATAGGTATCTATTAGCAAACTATACATCTCTGAATGAATGTTCTCAATAAGA 9734444 Query 11951 ATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 |||||||| ||||||||||| || ||||||| Sbjct 9734445 ATTTGAAAGCCATAGAAACAGCGCGCCTCTG 9734475 >seq179 Length=6459238 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || | ||||||| ||||| || ||||| || || ||||||||| Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | ||| || |||| ||||| ||||| |||||||| || | || | Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 3619986 CTGTTTCTGATGCCAT 3620001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468513637396640