Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq71 156 6e-33
seq38 125 9e-24
seq179 118 1e-21
seq48 114 2e-20
seq8 91.5 2e-13
>seq71
Length=13082442
Score = 156 bits (172), Expect = 6e-33
Identities = 330/478 (69%), Gaps = 22/478 (5%)
Strand=Plus/Minus
Query 36137 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 36196
|||| ||||| ||||| | || | ||| | |||| || || ||| ||| |||||||
Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027
Query 36197 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 36256
| ||| |||||||| | | || |||||| || || || ||||| ||||| ||
Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970
Query 36257 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 36316
| || || ||||||||| ||||||| || || |||||||| | | | || |||
Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913
Query 36317 TAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 36375
|| || | ||| |||| | ||| || || || |||||||| ||||||||
Sbjct 3039912 TATGTTGCTTCTT--TGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857
Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435
| ||| || || |||| |||||| | || |||| || ||||||| ||| || ||
Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798
Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
||| | |||||| |||||| ||||| ||||||| ||| ||||| || || |||||
Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742
Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555
||| | || | ||| ||||||| || | | | | | | | || ||| |||| ||
Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTAC 3039683
Query 36556 TATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 36609
| | || || ||| |||||||| || ||||||||||| | |||| |||||| ||||
Sbjct 3039682 TCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626
>seq38
Length=18080598
Score = 125 bits (138), Expect = 9e-24
Identities = 99/119 (83%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| || |||| ||| ||| ||||| | | | |
Sbjct 12171253 CCTGCTCCAAATTTGCTGAAATCTCTCTTGGACTGTAAAGTGTATAGAGTCAAACCGAAA 12171312
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| ||||||||||||| ||| |||||||||| ||| |||| |||||||||||| || ||
Sbjct 12171313 AATACTGCAGTAGTCAACATAAAAGCTTGCAGAACAACATACACATCATAGAATGTCAC 12171371
Score = 116 bits (128), Expect = 5e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| || |||| || | | || || |||| ||||||||||||||||||||||
Sbjct 12161676 TTTTTATTAAATGCTTCTAATAAACGCAATAGGTGCAGGAACAGATTGATGATATCCAAG 12161735
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| ||||| | || || | ||| |||||||| || || || || || ||| ||
Sbjct 12161736 TAGAGGTTGATGGCAGCCAATATATACTCTTCAGGGGACAGTTTGTGAATCAGTAGATGA 12161795
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
|| ||||| || |||||||| ||||| | ||| || || | ||||| | || | ||||
Sbjct 12161796 GTATCATAAATGATGAATCCACAGAACAGAAGAGCTCCCATTGCAGAAAAGATTACCTCC 12161855
Query 9411 AC 9412
||
Sbjct 12161856 AC 12161857
>seq179
Length=6459238
Score = 118 bits (130), Expect = 1e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| |
Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||||
Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985
Query 65301 CTATTTCT 65308
|| |||||
Sbjct 3619986 CTGTTTCT 3619993
Score = 107 bits (118), Expect = 3e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471
|| ||| ||||||| || ||||| || | || | || | ||||| || || || ||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113
Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531
|| || |||||||||||||||||||||| |||||||| || ||||| | || |||
Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173
Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591
|| ||||| | | || ||||| || || |||| || || || |||||||| || ||
Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233
Query 65592 CTATGTCTCTTATTAGA 65608
| ||| | ||||| ||
Sbjct 3625234 CGATGACGTTTATTTGA 3625250
Score = 107 bits (118), Expect = 3e-18
Identities = 128/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| ||||||||||| || | ||| || || || || || || |||| |
Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
||||||| || || || | || || | || || || |||| || |||| ||||| |
Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972
|||| || || || |||||| | |||| |||||||||||| ||||| | ||||
Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 100 bits (110), Expect = 4e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503
||| |||| | || || |||||||| | || || ||||| || ||||||||| | |||
Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287
Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 66563
|| || || ||||| || |||||||| | || |||||| || ||||| || || |
Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347
Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCA 66593
|| | ||||| |||||||||||| | ||||
Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119
|| ||||||||||||||||| || ||||| || || | ||| | ||| |||| || ||
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179
|| || || || || ||||| || ||||| || || | | ||| || | ||||| |||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 66180 TCCAAGTATATGGC 66193
|||||||| |||||
Sbjct 3630708 TCCAAGTAGATGGC 3630721
>seq48
Length=16487017
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||||||||| | ||| |||||||| || | ||| ||||||| || || || |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| |||||||| ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 36300 C 36300
|
Sbjct 7775720 C 7775720
Score = 104 bits (114), Expect = 3e-17
Identities = 86/105 (82%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478
|| |||| ||| || ||||| | |||||||||||||| ||||| |||||||| || ||
Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333
Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523
|||||||| || |||||||| | ||| || || ||||||||||||
Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288
>seq8
Length=27308231
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715
|| ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| ||
Sbjct 9743409 ACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGGA 9743468
Query 36716 TATTGAATTGGAAAAATAACAAATC 36740
|| |||||||||||||| |||||||
Sbjct 9743469 TACTGAATTGGAAAAATGACAAATC 9743493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658157119033040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |