Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq71 156 6e-33 seq38 125 9e-24 seq179 118 1e-21 seq48 114 2e-20 seq8 91.5 2e-13 >seq71 Length=13082442 Score = 156 bits (172), Expect = 6e-33 Identities = 330/478 (69%), Gaps = 22/478 (5%) Strand=Plus/Minus Query 36137 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 36196 |||| ||||| ||||| | || | ||| | |||| || || ||| ||| ||||||| Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027 Query 36197 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 36256 | ||| |||||||| | | || |||||| || || || ||||| ||||| || Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970 Query 36257 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 36316 | || || ||||||||| ||||||| || || |||||||| | | | || ||| Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913 Query 36317 TAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 36375 || || | ||| |||| | ||| || || || |||||||| |||||||| Sbjct 3039912 TATGTTGCTTCTT--TGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 | ||| || || |||| |||||| | || |||| || ||||||| ||| || || Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||| | |||||| |||||| ||||| ||||||| ||| ||||| || || ||||| Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 ||| | || | ||| ||||||| || | | | | | | | || ||| |||| || Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTAC 3039683 Query 36556 TATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 36609 | | || || ||| |||||||| || ||||||||||| | |||| |||||| |||| Sbjct 3039682 TCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626 >seq38 Length=18080598 Score = 125 bits (138), Expect = 9e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||| ||| ||| ||||| | | | | Sbjct 12171253 CCTGCTCCAAATTTGCTGAAATCTCTCTTGGACTGTAAAGTGTATAGAGTCAAACCGAAA 12171312 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || ||||||||||||| ||| |||||||||| ||| |||| |||||||||||| || || Sbjct 12171313 AATACTGCAGTAGTCAACATAAAAGCTTGCAGAACAACATACACATCATAGAATGTCAC 12171371 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| || |||| || | | || || |||| |||||||||||||||||||||| Sbjct 12161676 TTTTTATTAAATGCTTCTAATAAACGCAATAGGTGCAGGAACAGATTGATGATATCCAAG 12161735 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | || || | ||| |||||||| || || || || || ||| || Sbjct 12161736 TAGAGGTTGATGGCAGCCAATATATACTCTTCAGGGGACAGTTTGTGAATCAGTAGATGA 12161795 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 || ||||| || |||||||| ||||| | ||| || || | ||||| | || | |||| Sbjct 12161796 GTATCATAAATGATGAATCCACAGAACAGAAGAGCTCCCATTGCAGAAAAGATTACCTCC 12161855 Query 9411 AC 9412 || Sbjct 12161856 AC 12161857 >seq179 Length=6459238 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985 Query 65301 CTATTTCT 65308 || ||||| Sbjct 3619986 CTGTTTCT 3619993 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| ||||||| || ||||| || | || | || | ||||| || || || || Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || || |||||||||||||||||||||| |||||||| || ||||| | || ||| Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || ||||| | | || ||||| || || |||| || || || |||||||| || || Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233 Query 65592 CTATGTCTCTTATTAGA 65608 | ||| | ||||| || Sbjct 3625234 CGATGACGTTTATTTGA 3625250 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| ||||||||||| || | ||| || || || || || || |||| | Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | || || | || || || |||| || |||| ||||| | Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 66972 |||| || || || |||||| | |||| |||||||||||| ||||| | |||| Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 ||| |||| | || || |||||||| | || || ||||| || ||||||||| | ||| Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287 Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 66563 || || || ||||| || |||||||| | || |||||| || ||||| || || | Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCA 66593 || | ||||| |||||||||||| | |||| Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 || ||||||||||||||||| || ||||| || || | ||| | ||| |||| || || Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || ||||| || || | | ||| || | ||||| ||| Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707 Query 66180 TCCAAGTATATGGC 66193 |||||||| ||||| Sbjct 3630708 TCCAAGTAGATGGC 3630721 >seq48 Length=16487017 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||||||||| | ||| |||||||| || | ||| ||||||| || || || | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| |||||||| ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 36300 C 36300 | Sbjct 7775720 C 7775720 Score = 104 bits (114), Expect = 3e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 || |||| ||| || ||||| | |||||||||||||| ||||| |||||||| || || Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333 Query 36479 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 |||||||| || |||||||| | ||| || || |||||||||||| Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288 >seq8 Length=27308231 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 || ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| || Sbjct 9743409 ACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGGA 9743468 Query 36716 TATTGAATTGGAAAAATAACAAATC 36740 || |||||||||||||| ||||||| Sbjct 9743469 TACTGAATTGGAAAAATGACAAATC 9743493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658157119033040