Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq36 260 1e-64
seq208 113 4e-20
>seq36
Length=18184789
Score = 260 bits (288), Expect = 1e-64
Identities = 440/635 (69%), Gaps = 8/635 (1%)
Strand=Plus/Plus
Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011
|| || || |||| ||||| ||||| || || || ||||||| ||||| ||||| |||
Sbjct 7685954 TGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATC 7686013
Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071
| || || || |||| ||| ||||| ||||| ||||| ||||| |||||||| || |
Sbjct 7686014 ATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCA 7686073
Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACG 21131
|| | |||||| ||||| || || ||||| || || || |||||||| | | ||
Sbjct 7686074 GATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCG 7686133
Query 21132 TGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATG 21191
|| || ||||| | |||||| | | || || || ||||| || ||||||| |||
Sbjct 7686134 TGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATC 7686193
Query 21192 CGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCC 21251
| | || || || | || ||| || | || | | || || ||||| ||
Sbjct 7686194 CTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCT 7686253
Query 21252 TGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAAC 21311
|| || || | | | | | |||| || |||||||||||||||||||||||
Sbjct 7686254 TGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAG 7686313
Query 21312 CCGTACACCGGCCCCAGATCGCC---CTCGC-GGCGGTCCCCGAAGCCCTGCGCCGCCAA 21367
|| ||||| || |||| ||| || ||| | || || ||| |||||| ||||
Sbjct 7686314 CCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGT----GAACCCCTGCTTGTCCAA 7686369
Query 21368 AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGA 21427
|||| | || || || | |||||||| |||||||| || | || || || | |
Sbjct 7686370 AAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGC 7686429
Query 21428 GTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCT 21487
| ||||| ||| | ||||||||||||| |||||||| || ||| |||| ||||| |
Sbjct 7686430 ATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACG 7686489
Query 21488 TTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACAC 21547
||||| || | || ||||||||| || | |||||| || ||||| || | || |||||
Sbjct 7686490 CTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACAC 7686549
Query 21548 GGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCT 21582
||| |||||| |||||| | ||||||| |||
Sbjct 7686550 AGACACGGTGCCGGTGCCCGTGCGGTCCTCCTTCT 7686584
>seq208
Length=5466430
Score = 113 bits (124), Expect = 4e-20
Identities = 122/162 (75%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050
||||| |||| |||||| |||| || || || |||| ||| ||||||||||| |||||
Sbjct 1463614 AGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGC 1463555
Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110
|| ||||||||||| || | || | |||||| ||||| || || ||||| ||
Sbjct 1463554 ACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAAT 1463495
Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
|| || |||||||| | | |||| || ||||| || ||||||
Sbjct 1463494 ACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATC 1463453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427766063030880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |