Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq36 260 1e-64 seq208 113 4e-20 >seq36 Length=18184789 Score = 260 bits (288), Expect = 1e-64 Identities = 440/635 (69%), Gaps = 8/635 (1%) Strand=Plus/Plus Query 20952 TGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATC 21011 || || || |||| ||||| ||||| || || || ||||||| ||||| ||||| ||| Sbjct 7685954 TGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGCAATC 7686013 Query 21012 AGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCG 21071 | || || || |||| ||| ||||| ||||| ||||| ||||| |||||||| || | Sbjct 7686014 ATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATCTCCA 7686073 Query 21072 GACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACG 21131 || | |||||| ||||| || || ||||| || || || |||||||| | | || Sbjct 7686074 GATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGAGAGCG 7686133 Query 21132 TGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATG 21191 || || ||||| | |||||| | | || || || ||||| || ||||||| ||| Sbjct 7686134 TGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAATGATC 7686193 Query 21192 CGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCC 21251 | | || || || | || ||| || | || | | || || ||||| || Sbjct 7686194 CTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCACTCCT 7686253 Query 21252 TGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAAC 21311 || || || | | | | | |||| || ||||||||||||||||||||||| Sbjct 7686254 TGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAG 7686313 Query 21312 CCGTACACCGGCCCCAGATCGCC---CTCGC-GGCGGTCCCCGAAGCCCTGCGCCGCCAA 21367 || ||||| || |||| ||| || ||| | || || ||| |||||| |||| Sbjct 7686314 CCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGT----GAACCCCTGCTTGTCCAA 7686369 Query 21368 AAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGA 21427 |||| | || || || | |||||||| |||||||| || | || || || | | Sbjct 7686370 AAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGC 7686429 Query 21428 GTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCT 21487 | ||||| ||| | ||||||||||||| |||||||| || ||| |||| ||||| | Sbjct 7686430 ATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCCAGCACACCCTTCCAGAACACACG 7686489 Query 21488 TTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACAC 21547 ||||| || | || ||||||||| || | |||||| || ||||| || | || ||||| Sbjct 7686490 CTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTGTAGCGGGCTTGCAAGCCAAACAC 7686549 Query 21548 GGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCT 21582 ||| |||||| |||||| | ||||||| ||| Sbjct 7686550 AGACACGGTGCCGGTGCCCGTGCGGTCCTCCTTCT 7686584 >seq208 Length=5466430 Score = 113 bits (124), Expect = 4e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| |||||| |||| || || || |||| ||| ||||||||||| ||||| Sbjct 1463614 AGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGC 1463555 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || ||||||||||| || | || | |||||| ||||| || || ||||| || Sbjct 1463554 ACTCCGAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAAT 1463495 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 || || |||||||| | | |||| || ||||| || |||||| Sbjct 1463494 ACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATC 1463453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427766063030880