Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq103 107 2e-18 seq118 82.4 8e-11 >seq103 Length=10584223 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || |||||||| || ||||| || || | Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | ||||| |||||||||| Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9901098 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 9901097 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051 Score = 104 bits (114), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || |||| || ||||| | || || ||||| || ||||| || || || |||| Sbjct 9901492 AAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGA 9901433 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || || ||| |||||| | ||||| ||||| || ||||||||| Sbjct 9901432 CCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCT 9901373 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| ||||| | | || | ||||| |||||||||| || | ||| Sbjct 9901372 TTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTG 9901317 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||||| ||||| || || ||||| || ||||| Sbjct 9901316 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279 Score = 100 bits (110), Expect = 3e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || || ||||| || ||||| || || | Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | ||||| |||||||||| Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900416 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 9900415 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369 Score = 100 bits (110), Expect = 3e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || |||||||| || ||||| || || | Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||||| | ||||| ||||| || Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | ||||| |||||||||| Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900870 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| ||||| || || || || || ||||| Sbjct 9900869 TCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 9900824 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | || ||||| | || |||||||| || ||||| || || | Sbjct 9900367 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900308 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 9900307 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900248 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| ||| || | | || | ||||| ||||||| || Sbjct 9900247 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9900188 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || || || || || || || ||||| Sbjct 9900187 TCCAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACAAAGATCTGCAT 9900141 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| || || || |||| ||||| ||||| || || Sbjct 9900792 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9900733 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || ||||| |||||||||||||| ||| || || Sbjct 9900732 GCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTCGCCTTG 9900673 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| ||||||| || || | ||| | |||||||| ||||| || Sbjct 9900672 ACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9900613 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 9900612 TTCACGAAGATCTGCAT 9900596 >seq118 Length=9585089 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || ||||| || || ||||| || || || || || Sbjct 4427175 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4427116 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || || ||| |||| || | ||||| || || || ||||| |||||| Sbjct 4427115 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4427056 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||| ||||||||||||| | ||| | Sbjct 4427055 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4426996 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| |||| || || || || || ||||| Sbjct 4426995 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4426961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496052181275200