Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq103 107 2e-18
seq118 82.4 8e-11
>seq103
Length=10584223
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||| | || ||||| | || |||||||| || ||||| || || |
Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| ||||| || || ||| |||||| | ||||| || |||||
Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| ||| ||| || | | || | ||||| ||||||||||
Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9901098
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 9901097 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051
Score = 104 bits (114), Expect = 2e-17
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606
|| |||| || ||||| | || || ||||| || ||||| || || || ||||
Sbjct 9901492 AAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGA 9901433
Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666
||||| ||||| || || ||| |||||| | ||||| ||||| || |||||||||
Sbjct 9901432 CCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCT 9901373
Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726
||||| ||| ||||| | | || | ||||| |||||||||| || | |||
Sbjct 9901372 TTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTG 9901317
Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||||||| ||||| || || ||||| || |||||
Sbjct 9901316 ATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Score = 100 bits (110), Expect = 3e-16
Identities = 159/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||| | || ||||| | || || ||||| || ||||| || || |
Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| ||||| || || ||| |||||| | ||||| || |||||
Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| ||| ||| || | | || | ||||| ||||||||||
Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900416
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||| ||||| || || ||||| || |||||
Sbjct 9900415 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369
Score = 100 bits (110), Expect = 3e-16
Identities = 159/227 (70%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||| | || ||||| | || |||||||| || ||||| || || |
Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| ||||| || || ||| |||||| | ||||| ||||| ||
Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| ||| ||| || | | || | ||||| ||||||||||
Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900870
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||| ||||| || || || || || |||||
Sbjct 9900869 TCCA-GGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 9900824
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| | ||| | || ||||| | || |||||||| || ||||| || || |
Sbjct 9900367 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900308
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||||| ||||| || || ||| |||||| | ||||| || |||||
Sbjct 9900307 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900248
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|||||||||||||| ||| ||| || | | || | ||||| ||||||| ||
Sbjct 9900247 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9900188
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | |||||||| || || || || || || || |||||
Sbjct 9900187 TCCAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACAAAGATCTGCAT 9900141
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| |||||||| || ||||| || || || |||| ||||| ||||| || ||
Sbjct 9900792 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9900733
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||||| | ||||| || ||||| |||||||||||||| ||| || ||
Sbjct 9900732 GCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGGATCTTCGCCTTG 9900673
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||| || || | ||| | |||||||| ||||| ||
Sbjct 9900672 ACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9900613
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 9900612 TTCACGAAGATCTGCAT 9900596
>seq118
Length=9585089
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
|||| || | ||| | || ||||| || || ||||| || || || || ||
Sbjct 4427175 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTTCTGCCA 4427116
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| || || || ||||| ||||||
Sbjct 4427115 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTG 4427056
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||| ||||||||||||| | ||| |
Sbjct 4427055 TCCTGGATCTTGGCCTTGACATTCTCGATAGTGTCACTGGGCTCCACCTCCAAGGTGATG 4426996
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||||||| |||| || || || || || |||||
Sbjct 4426995 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 4426961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496052181275200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |