Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq71 159 5e-34 seq48 129 8e-25 seq179 114 2e-20 seq8 84.2 3e-11 >seq71 Length=13082442 Score = 159 bits (176), Expect = 5e-34 Identities = 318/459 (69%), Gaps = 23/459 (5%) Strand=Plus/Minus Query 49939 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATT 49998 |||| ||||| ||||| | || | ||| | |||| | || ||| ||| ||||||| Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027 Query 49999 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 50058 ||||| |||||||| | | || |||||| || || || ||||| ||||| || Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970 Query 50059 GCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA 50118 | || || ||||||||| ||||||| || || |||||||| || | | || ||| Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913 Query 50119 TAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 50177 || || ||| ||| |||| | ||| || || || |||||||| |||||||| Sbjct 3039912 TA--TGTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857 Query 50178 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 50237 | ||||| ||| |||| |||||| | || |||| || ||||||| |||||| || Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798 Query 50238 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297 || | |||||| |||||| ||||| ||||||| ||| || || || || ||||| Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742 Query 50298 ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAG--CTAAATTTTCATTC 50355 ||| | || | ||| ||||| | || | | | | ||| | || ||| |||| Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACTG---CAGTACCAAGTTTGCATTT 3039685 Query 50356 ACTATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG 50393 ||| | || || ||| |||||||| || ||||||||||| Sbjct 3039684 ACTCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATG 3039647 >seq48 Length=16487017 Score = 129 bits (142), Expect = 8e-25 Identities = 104/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||||||||| ||||| |||||||| || | ||| ||||||| || || || | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| |||||||| ||||| || |||||||||||||||||||| || || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 50102 CAACAA 50107 | |||| Sbjct 7775720 CTACAA 7775715 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 || ||||| || |||||||| | ||| || || ||||| |||||| Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288 >seq179 Length=6459238 Score = 114 bits (126), Expect = 2e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| || ||||| |||||||| || || |||||||| || || | || |||| Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985 Query 79180 CTATTTCT 79187 || ||||| Sbjct 3619986 CTGTTTCT 3619993 Score = 114 bits (126), Expect = 2e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||| || || | || | ||| || ||||| || || || || ||||| ||| Sbjct 3625063 TATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAGGCTCCATAA 3625122 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||||||||||||| |||| ||||| || || |||||| | || ||||| ||||| Sbjct 3625123 TAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCAAAAGGATAT 3625182 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | | || ||||| || || |||| || || || |||||||| || || | ||| | Sbjct 3625183 CTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGGCGATGACGT 3625242 Query 79480 TTATTAGA 79487 ||||| || Sbjct 3625243 TTATTTGA 3625250 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| |||||||| || || | ||| || || || || ||||| ||||| | Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||||| || || || | || || | || || || |||| || |||| ||||| | Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 80851 |||| || || || |||||| | |||| |||||||||||| ||||| | |||| Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298 Score = 105 bits (116), Expect = 1e-17 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994 || ||| ||||||||||||||||| || ||||| || || | ||| ||||| |||| || Sbjct 3630584 CTCTACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCG 3630643 Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054 ||||| || || || || ||||| || ||||| || || | | ||| || | ||||| Sbjct 3630644 CTGCTCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCA 3630703 Query 80055 CGGTTCCAAGTATATGGC 80072 ||||||||||| ||||| Sbjct 3630704 TGGTTCCAAGTAGATGGC 3630721 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 80323 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 ||| |||| | || || |||||||| | || || ||||| || ||||||||| | ||| Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287 Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCG 80442 ||||| || ||||| || |||||||| | || |||||| || ||||| || || | Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347 Query 80443 ACACGCATTAACATGTGCTGAGGTCTTTCA 80472 || | ||||| |||||||||||| | |||| Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377 >seq8 Length=27308231 Score = 84.2 bits (92), Expect = 3e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| | Sbjct 9743408 TACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGG 9743467 Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542 ||| || ||||| ||||| ||||||| Sbjct 9743468 ATACTGAATTGGAAAAATGACAAATC 9743493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718251687245840