Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq71 159 5e-34
seq48 129 8e-25
seq179 114 2e-20
seq8 84.2 3e-11
>seq71
Length=13082442
Score = 159 bits (176), Expect = 5e-34
Identities = 318/459 (69%), Gaps = 23/459 (5%)
Strand=Plus/Minus
Query 49939 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATT 49998
|||| ||||| ||||| | || | ||| | |||| | || ||| ||| |||||||
Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027
Query 49999 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 50058
||||| |||||||| | | || |||||| || || || ||||| ||||| ||
Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970
Query 50059 GCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCA 50118
| || || ||||||||| ||||||| || || |||||||| || | | || |||
Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913
Query 50119 TAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 50177
|| || ||| ||| |||| | ||| || || || |||||||| ||||||||
Sbjct 3039912 TA--TGTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857
Query 50178 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 50237
| ||||| ||| |||| |||||| | || |||| || ||||||| |||||| ||
Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798
Query 50238 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 50297
|| | |||||| |||||| ||||| ||||||| ||| || || || || |||||
Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742
Query 50298 ACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAG--CTAAATTTTCATTC 50355
||| | || | ||| ||||| | || | | | | ||| | || ||| ||||
Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACTG---CAGTACCAAGTTTGCATTT 3039685
Query 50356 ACTATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG 50393
||| | || || ||| |||||||| || |||||||||||
Sbjct 3039684 ACTCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATG 3039647
>seq48
Length=16487017
Score = 129 bits (142), Expect = 8e-25
Identities = 104/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||||||||| ||||| |||||||| || | ||| ||||||| || || || |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||| |||||||| ||||| || |||||||||||||||||||| || || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 50102 CAACAA 50107
| ||||
Sbjct 7775720 CTACAA 7775715
Score = 95.1 bits (104), Expect = 2e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280
|| |||| |||||| || || | |||||||||||||| ||||| |||||||| || ||
Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333
Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325
|| ||||| || |||||||| | ||| || || ||||| ||||||
Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288
>seq179
Length=6459238
Score = 114 bits (126), Expect = 2e-20
Identities = 102/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119
|| ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| |
Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925
Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179
|| |||||||| || ||||| |||||||| || || |||||||| || || | || ||||
Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985
Query 79180 CTATTTCT 79187
|| |||||
Sbjct 3619986 CTGTTTCT 3619993
Score = 114 bits (126), Expect = 2e-20
Identities = 138/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
||||||||||| || || | || | ||| || ||||| || || || || ||||| |||
Sbjct 3625063 TATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAGGCTCCATAA 3625122
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419
|||||||||||||| |||| ||||| || || |||||| | || ||||| |||||
Sbjct 3625123 TAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCAAAAGGATAT 3625182
Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479
| | || ||||| || || |||| || || || |||||||| || || | ||| |
Sbjct 3625183 CTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGGCGATGACGT 3625242
Query 79480 TTATTAGA 79487
||||| ||
Sbjct 3625243 TTATTTGA 3625250
Score = 111 bits (122), Expect = 2e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| || | ||| |||||||| || || | ||| || || || || ||||| ||||| |
Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
||||||| || || || | || || | || || || |||| || |||| ||||| |
Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244
Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 80851
|||| || || || |||||| | |||| |||||||||||| ||||| | ||||
Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 105 bits (116), Expect = 1e-17
Identities = 106/138 (77%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 79994
|| ||| ||||||||||||||||| || ||||| || || | ||| ||||| |||| ||
Sbjct 3630584 CTCTACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCG 3630643
Query 79995 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 80054
||||| || || || || ||||| || ||||| || || | | ||| || | |||||
Sbjct 3630644 CTGCTCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCA 3630703
Query 80055 CGGTTCCAAGTATATGGC 80072
||||||||||| |||||
Sbjct 3630704 TGGTTCCAAGTAGATGGC 3630721
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 80323 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382
||| |||| | || || |||||||| | || || ||||| || ||||||||| | |||
Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287
Query 80383 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCG 80442
||||| || ||||| || |||||||| | || |||||| || ||||| || || |
Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347
Query 80443 ACACGCATTAACATGTGCTGAGGTCTTTCA 80472
|| | ||||| |||||||||||| | ||||
Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377
>seq8
Length=27308231
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| |
Sbjct 9743408 TACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGG 9743467
Query 50517 ATATTGGATTGGGAAAATAACAAATC 50542
||| || ||||| ||||| |||||||
Sbjct 9743468 ATACTGAATTGGAAAAATGACAAATC 9743493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718251687245840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |