Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq71 129 6e-25 seq48 129 6e-25 >seq71 Length=13082442 Score = 129 bits (142), Expect = 6e-25 Identities = 258/373 (69%), Gaps = 21/373 (6%) Strand=Plus/Minus Query 13853 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912 ||| ||||| || ||| | || | || |||| | | | ||||||| |||||||||| Sbjct 3040084 TAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAG 3040025 Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972 ||| || ||||| | ||| || |||| || || ||| || | ||| ||||| | | Sbjct 3040024 TTCATTGGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGT 3039968 Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032 || || | |||||| ||||| ||||| || ||||| |||| | | ||| ||| | Sbjct 3039967 GAAAGAATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATA 3039911 Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA-TTCAGAtttttttttAATAAAAT 14091 | ||||| |||| | |||| || ||| || | ||| ||| ||||||| | || Sbjct 3039910 TGTTGCTTCTTTG-----TCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858 Query 14092 CCATTGTTTCAATAGCATTAAATAAATATTCC-TTCTCTTTAGTACTTGAAATGTATGTA 14150 | ||||||||| |||| || | | ||||| |||| || ||| ||| ||| || || Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAATTCCTTTCTTTTGAGT-CTT-TAATATAAGTG 3039800 Query 14151 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14210 |||||||| | | ||||||||||| || |||||||| | | || || || ||||| Sbjct 3039799 TCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAG 3039744 Query 14211 AAGCATCTAGCTT 14223 || || | |||| Sbjct 3039743 AAACAGCAGGCTT 3039731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| || ||||| || |||||||||||| |||| ||||| | ||| ||||| ||| Sbjct 3041102 TGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTCTCC 3041043 Query 13644 ATAAAATCAAATGGATTT 13661 ||| | |||||||||||| Sbjct 3041042 ATATAGTCAAATGGATTT 3041025 >seq48 Length=16487017 Score = 129 bits (142), Expect = 6e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||||||||||||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| ||||| || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 7775720 CTACAACACGTTCGCC 7775705 Score = 102 bits (112), Expect = 8e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || |||||| | |||||||| | ||||| || ||||||||||| ||||| ||| Sbjct 7780097 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 7780038 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661 ||||| || ||||| ||||||||||||||||| ||| Sbjct 7780037 TCCAGAGAGATATTCTCCATAAAATCAAATGGGTTT 7780002 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||| || || |||||||| | |||||||||||||| ||||||||||||||||| || || Sbjct 7772387 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 7772328 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||| ||||| || || | |||||||| |||||||| Sbjct 7772327 AAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTC 7772289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479716570480400