Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq71 129 6e-25
seq48 129 6e-25
>seq71
Length=13082442
Score = 129 bits (142), Expect = 6e-25
Identities = 258/373 (69%), Gaps = 21/373 (6%)
Strand=Plus/Minus
Query 13853 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13912
||| ||||| || ||| | || | || |||| | | | ||||||| ||||||||||
Sbjct 3040084 TAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAG 3040025
Query 13913 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13972
||| || ||||| | ||| || |||| || || ||| || | ||| ||||| | |
Sbjct 3040024 TTCATTGGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGT 3039968
Query 13973 AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAA 14032
|| || | |||||| ||||| ||||| || ||||| |||| | | ||| ||| |
Sbjct 3039967 GAAAGAATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATA 3039911
Query 14033 CGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA-TTCAGAtttttttttAATAAAAT 14091
| ||||| |||| | |||| || ||| || | ||| ||| ||||||| | ||
Sbjct 3039910 TGTTGCTTCTTTG-----TCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858
Query 14092 CCATTGTTTCAATAGCATTAAATAAATATTCC-TTCTCTTTAGTACTTGAAATGTATGTA 14150
| ||||||||| |||| || | | ||||| |||| || ||| ||| ||| || ||
Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAATTCCTTTCTTTTGAGT-CTT-TAATATAAGTG 3039800
Query 14151 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14210
|||||||| | | ||||||||||| || |||||||| | | || || || |||||
Sbjct 3039799 TCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAG 3039744
Query 14211 AAGCATCTAGCTT 14223
|| || | ||||
Sbjct 3039743 AAACAGCAGGCTT 3039731
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|||||||| || ||||| || |||||||||||| |||| ||||| | ||| ||||| |||
Sbjct 3041102 TGATATTCTCTTACTCTCTTCTCAAAGAAGTTAATTTTCCCTTCTAATGAAATATTCTCC 3041043
Query 13644 ATAAAATCAAATGGATTT 13661
||| | ||||||||||||
Sbjct 3041042 ATATAGTCAAATGGATTT 3041025
>seq48
Length=16487017
Score = 129 bits (142), Expect = 6e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||||||||||||||| || ||||| |||||||| ||||| || |||||||| |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || || |||||||| ||||| ||||| || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 14014 CTATTAATCGTTCTCC 14029
||| | ||||| ||
Sbjct 7775720 CTACAACACGTTCGCC 7775705
Score = 102 bits (112), Expect = 8e-17
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625
|| || || |||||| | |||||||| | ||||| || ||||||||||| ||||| |||
Sbjct 7780097 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 7780038
Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13661
||||| || ||||| ||||||||||||||||| |||
Sbjct 7780037 TCCAGAGAGATATTCTCCATAAAATCAAATGGGTTT 7780002
Score = 93.3 bits (102), Expect = 4e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200
||| || || |||||||| | |||||||||||||| ||||||||||||||||| || ||
Sbjct 7772387 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 7772328
Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239
||| ||||| || || | |||||||| ||||||||
Sbjct 7772327 AAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTC 7772289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479716570480400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |