Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq71 129 6e-25
seq48 123 2e-23
>seq71
Length=13082442
Score = 129 bits (142), Expect = 6e-25
Identities = 258/373 (69%), Gaps = 21/373 (6%)
Strand=Plus/Minus
Query 13641 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700
||| ||||| || ||| | || | || |||| | | | ||||||| ||||||||||
Sbjct 3040084 TAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAG 3040025
Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760
||| || ||||| | ||| || |||| || || ||| || | ||| ||||| | |
Sbjct 3040024 TTCATTGGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGT 3039968
Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820
||| || | |||||| ||||| ||||| || ||||| |||| | | ||| ||| |
Sbjct 3039967 GAAAGAATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATA 3039911
Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCA-TTCAGAtttttttttAATAAAAT 13879
| ||||| |||| | |||| || ||| || | ||| ||| ||||||| | ||
Sbjct 3039910 TGTTGCTTCTTTG-----TCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858
Query 13880 CCATTGTTTCGATTGCATTGAATAAATGTTCC-TTCTCTTTAGTACTTGAAATGTATGTA 13938
| |||||| || ||||||| | | |||| |||| || ||| ||| ||| || ||
Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAATTCCTTTCTTTTGAGT-CTT-TAATATAAGTG 3039800
Query 13939 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAA 13998
|||||||| | | ||||||||||| || ||||||| | | || || || |||||
Sbjct 3039799 TCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAG 3039744
Query 13999 AAACATCTAGCTT 14011
||||| | ||||
Sbjct 3039743 AAACAGCAGGCTT 3039731
>seq48
Length=16487017
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||||||||||||||| || ||||| |||||||| ||||| || |||||||| |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| ||||| || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||||| ||
Sbjct 7775720 CTACAACACGTTCGCC 7775705
Score = 93.3 bits (102), Expect = 4e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413
|| || || |||||| | |||||||| | ||||| || ||||| ||||| ||||| |||
Sbjct 7780097 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 7780038
Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449
||||| || ||||| ||||||||||| ||||| |||
Sbjct 7780037 TCCAGAGAGATATTCTCCATAAAATCAAATGGGTTT 7780002
Score = 89.7 bits (98), Expect = 5e-13
Identities = 70/84 (83%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
||| || || |||||||| | |||||||||||||| ||||||||||| ||||| || ||
Sbjct 7772387 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 7772328
Query 13989 AAAACCATAAAAACATCTAGCTTC 14012
||| ||||| ||||| | ||||||
Sbjct 7772327 AAAGCCATAGAAACAGCGAGCTTC 7772304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478577397621840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |