Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq71 129 6e-25 seq48 123 2e-23 >seq71 Length=13082442 Score = 129 bits (142), Expect = 6e-25 Identities = 258/373 (69%), Gaps = 21/373 (6%) Strand=Plus/Minus Query 13641 TAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 ||| ||||| || ||| | || | || |||| | | | ||||||| |||||||||| Sbjct 3040084 TAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATAAG 3040025 Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 ||| || ||||| | ||| || |||| || || ||| || | ||| ||||| | | Sbjct 3040024 TTCATTGGAAAAAGCTAAGCCAAGCATTAAACC---TTTCTTGAGCCAGAATATCGATGT 3039968 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||| || | |||||| ||||| ||||| || ||||| |||| | | ||| ||| | Sbjct 3039967 GAAAGAATCAGAAAAG---ATTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCATA 3039911 Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCA-TTCAGAtttttttttAATAAAAT 13879 | ||||| |||| | |||| || ||| || | ||| ||| ||||||| | || Sbjct 3039910 TGTTGCTTCTTTG-----TCTCCA--ATCCAGCACAGTCCAGCTTTCTTTTTAACACAAG 3039858 Query 13880 CCATTGTTTCGATTGCATTGAATAAATGTTCC-TTCTCTTTAGTACTTGAAATGTATGTA 13938 | |||||| || ||||||| | | |||| |||| || ||| ||| ||| || || Sbjct 3039857 GTAGTGTTTCAATGCCATTGAAGAGAAATTCCTTTCTTTTGAGT-CTT-TAATATAAGTG 3039800 Query 13939 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAA 13998 |||||||| | | ||||||||||| || ||||||| | | || || || ||||| Sbjct 3039799 TCAATAAGGAGAC--TACATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAG 3039744 Query 13999 AAACATCTAGCTT 14011 ||||| | |||| Sbjct 3039743 AAACAGCAGGCTT 3039731 >seq48 Length=16487017 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||||||||||||||| || ||||| |||||||| ||||| || |||||||| | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| ||||| || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 7775720 CTACAACACGTTCGCC 7775705 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 13354 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCT 13413 || || || |||||| | |||||||| | ||||| || ||||| ||||| ||||| ||| Sbjct 7780097 GACATCACTCCCATTCTCTGATATTCTCCTACTCTCTTCTCAAAGAAGTTGGTTTTCCCT 7780038 Query 13414 TCCAGTGATATATTTTCCATAAAATCGAATGGATTT 13449 ||||| || ||||| ||||||||||| ||||| ||| Sbjct 7780037 TCCAGAGAGATATTCTCCATAAAATCAAATGGGTTT 7780002 Score = 89.7 bits (98), Expect = 5e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||| || || |||||||| | |||||||||||||| ||||||||||| ||||| || || Sbjct 7772387 AATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTG 7772328 Query 13989 AAAACCATAAAAACATCTAGCTTC 14012 ||| ||||| ||||| | |||||| Sbjct 7772327 AAAGCCATAGAAACAGCGAGCTTC 7772304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478577397621840