Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq71 145 1e-29 seq48 120 4e-22 seq179 114 2e-20 >seq71 Length=13082442 Score = 145 bits (160), Expect = 1e-29 Identities = 329/480 (69%), Gaps = 26/480 (5%) Strand=Plus/Minus Query 42044 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATT 42103 |||| ||||| ||||| | || | ||| | |||| | || ||||||| ||||||| Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027 Query 42104 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGAC 42163 | ||| |||||||| | | || |||||| || || || ||||| ||||| || Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970 Query 42164 GCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 42223 | || || ||||||||| ||||||| || || |||||||| | | | || ||| Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913 Query 42224 TAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 42282 || || | ||| |||| | ||| || || || |||||||| |||||||| Sbjct 3039912 TATGTTGCTTCTT--TGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857 Query 42283 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 42342 | ||||| ||| |||| |||||| | || |||| || ||||||| ||| || || Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798 Query 42343 GATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 42402 || | |||||| |||||| ||||| ||||||| ||| || || || || ||||| Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742 Query 42403 ACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAG--CTAAATTTTCGTTC 42460 ||| | ||| | ||| | ||||| || | | | | ||| | || ||| | || Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACTG---CAGTACCAAGTTTGCATTT 3039685 Query 42461 ACTATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 42516 ||| | || || ||| |||||||| || ||||||||||| | |||| |||||| |||| Sbjct 3039684 ACTCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626 >seq48 Length=16487017 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||||||||| | ||| |||||||| || | ||| ||||||| || || || | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 42207 C 42207 | Sbjct 7775720 C 7775720 Score = 86.0 bits (94), Expect = 8e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 || |||| ||| || || || | |||||||||||||| ||||| |||||||| || || Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333 Query 42386 ATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||| || |||||||| | || || || | |||||||||| Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288 >seq179 Length=6459238 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || || | Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | |||| Sbjct 3619986 CTGTTTCTGATGCCAT 3620001 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| ||||||| || ||||| || | | | ||| | ||||| || || || || Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 ||||||||||||||||||||||| |||| ||||| || || ||||| || || ||| Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || || |||| || || || |||||||| || || Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 3625234 CGATGACGTTTATTTGA 3625250 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||| || || | ||| || || || || ||||| |||| | Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||||| || || || | || || | || || || |||| || |||| ||||| | Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTT 72934 |||| || || || |||||| | |||| |||||||||||| ||||| | |||| Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 72021 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 72080 ||| ||||||||||||||||| || ||||| || || | ||| ||||| |||| || || Sbjct 3630587 TACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTG 3630646 Query 72081 CTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 ||| || || || || ||||| || ||||| || || | | ||| || | ||||| || Sbjct 3630647 CTCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGG 3630706 Query 72141 TTCCAAGTATATGGC 72155 ||||||||| ||||| Sbjct 3630707 TTCCAAGTAGATGGC 3630721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671123210108560