Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq103 93.3 4e-14 >seq103 Length=10584223 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | || |||| || || || | || |||||||| || |||||||| || | Sbjct 9901501 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 9901442 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || ||| |||||| | ||||| ||||| || Sbjct 9901441 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9901382 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || ||||| | | || | ||||| |||| || ||| Sbjct 9901381 ATGCCTTCTTTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCACT 9901326 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| || || ||||| || ||||| Sbjct 9901325 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || ||||| | || || ||||| || |||||||| || | Sbjct 9900822 CCACCTCTGAGACGAAGGACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900763 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || ||| |||||| | ||||| || ||||| Sbjct 9900762 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 9900703 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || || | | || | ||||| |||| |||||| Sbjct 9900702 ATGCCTTCTTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9900643 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| || || ||||| || ||||| Sbjct 9900642 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || ||||| || |||||||| || || |||| ||||| || || || || Sbjct 9901247 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9901188 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | ||||| || ||||| |||||||||||||| || ||| || Sbjct 9901187 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9901128 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| |||| || ||||| | || | |||||||| ||||| || Sbjct 9901127 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9901068 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 9901067 TTCACGAAGATCTGCAT 9901051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 ||||| || |||||||| || || |||| ||||| || || || || ||| || Sbjct 9900559 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAG 9900500 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 |||| | ||||| || ||||| |||||||||||||| || ||| || | | Sbjct 9900499 ATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTC 9900440 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||| |||| || ||||| | || | |||||||| ||||| || || ||| Sbjct 9900439 TCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 9900380 Query 143174 AATATTTGCAT 143184 || || ||||| Sbjct 9900379 AAGATCTGCAT 9900369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507002320381920