Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq103 93.3 4e-14
>seq103
Length=10584223
Score = 93.3 bits (102), Expect = 4e-14
Identities = 157/227 (69%), Gaps = 4/227 (2%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| | || |||| || || || | || |||||||| || |||||||| || |
Sbjct 9901501 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGAC 9901442
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| || || || || ||| |||||| | ||||| ||||| ||
Sbjct 9901441 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9901382
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||||||||| || ||||| | | || | ||||| |||| || |||
Sbjct 9901381 ATGCCTTCTTTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCACT 9901326
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||||| ||||| || || ||||| || |||||
Sbjct 9901325 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| | ||| | || ||||| | || || ||||| || |||||||| || |
Sbjct 9900822 CCACCTCTGAGACGAAGGACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900763
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| |||| ||||| || || || || ||| |||||| | ||||| || |||||
Sbjct 9900762 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 9900703
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|||||||||||||| || || || | | || | ||||| |||| ||||||
Sbjct 9900702 ATGCCTTCTTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9900643
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||||| ||||| || || ||||| || |||||
Sbjct 9900642 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596
Score = 86.0 bits (94), Expect = 6e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| || ||||| || |||||||| || || |||| ||||| || || || ||
Sbjct 9901247 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9901188
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
||| |||||| | ||||| || ||||| |||||||||||||| || ||| ||
Sbjct 9901187 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9901128
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167
| | || | ||||| |||| || ||||| | || | |||||||| ||||| ||
Sbjct 9901127 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9901068
Query 143168 TTTACGAATATTTGCAT 143184
|| ||||| || |||||
Sbjct 9901067 TTCACGAAGATCTGCAT 9901051
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053
||||| || |||||||| || || |||| ||||| || || || || ||| ||
Sbjct 9900559 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAG 9900500
Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113
|||| | ||||| || ||||| |||||||||||||| || ||| || | |
Sbjct 9900499 ATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTC 9900440
Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173
|| | ||||| |||| || ||||| | || | |||||||| ||||| || || |||
Sbjct 9900439 TCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 9900380
Query 143174 AATATTTGCAT 143184
|| || |||||
Sbjct 9900379 AAGATCTGCAT 9900369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507002320381920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |