Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq36 188 1e-42 seq179 93.3 6e-14 >seq36 Length=18184789 Score = 188 bits (208), Expect = 1e-42 Identities = 418/625 (67%), Gaps = 4/625 (1%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 ||| || |||| |||||| ||| || ||||| || | |||||||| ||||| | Sbjct 7686507 CCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTGCTGTGGTTT 7686448 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGA--GCCGAAAGGGTGTACACATTTGGAGCG 70013 ||| || || || ||||| || ||||| ||| || || ||| | || ||| || Sbjct 7686447 ATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAA--GGAGTAAAAATCTGGGACG 7686390 Query 70014 GCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATC 70073 ||| | |||| | ||||||| || || ||||| |||| | || || ||| Sbjct 7686389 CCAATGGATCTCGAGACTTTTTGGACAAGCAGGGGTTCACTACCAGAGAGGAAGGAGATT 7686330 Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133 |||| |||||||| || ||||||||||| || | || | | || ||| | | Sbjct 7686329 TGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATGAATA 7686270 Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCA 70193 |||| ||||| || || || || |||||| | || | | |||||||||| |||| |||| Sbjct 7686269 CAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAATCAAAACCA 7686210 Query 70194 ATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGG 70253 |||| || || |||||| | ||||| | ||||||||| |||| | | | |||| Sbjct 7686209 ATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTCCTCTGATGG 7686150 Query 70254 CACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCT 70313 || |||| || || ||| | | |||||| || | |||| | | || || Sbjct 7686149 CATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGCTTTCTTGTC 7686090 Query 70314 TAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATT 70373 | || ||| | || || |||||||| || || || || |||||||| || || | Sbjct 7686089 AGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTGCCAGTTACT 7686030 Query 70374 CTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACA 70433 | || | || ||||||||||||| | || |||||||| | || || ||||||| Sbjct 7686029 CCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATTTTGTACACA 7685970 Query 70434 CCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAAC 70493 | | || || ||||| | || || ||||| || | |||| | || | || || | | Sbjct 7685969 CTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATTCAGCTTCAGC 7685910 Query 70494 GGGAGCCGAGACCTTTTCCCAAGCT 70518 | || || |||||||| || ||||| Sbjct 7685909 GAGAACCAAGACCTTTCCCTAAGCT 7685885 >seq179 Length=6459238 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 96891 CGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATC 96950 |||||||| || | ||| ||||||||||||| |||||| ||| ||||||| ||| | Sbjct 3630736 CGGCCAGGGGCATTTGCCATCTACTTGGAACCATGGCACTTAGACATTTTTGAATTTCTT 3630677 Query 96951 GAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTC 97010 || || || ||| |||| |||||| ||||||||||| | |||| ||| ||| Sbjct 3630676 GATCTGAAGAAGAACACTGGGAAGGAAGAGCAGCGAGCCAGGGATCTTTTTTTTGCCCTC 3630617 Query 97011 TGGGTGCCAGATTTGTTCATGAAGCGCGT 97039 ||| | |||||| | || ||||| || || Sbjct 3630616 TGGATCCCAGATCTCTTTATGAAACGGGT 3630588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741041544264560