Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq103 84.2 1e-11
>seq103
Length=10584223
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200
|||| || || || |||| ||||| |||| || || ||||| || || ||||| ||||
Sbjct 9901503 CACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAG 9901444
Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260
||| || | || |||| ||||| || ||| || || | |||||||| | ||
Sbjct 9901443 ACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGG 9901384
Query 33261 GTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAA 33320
| ||||||||||| || ||| ||| || | | ||| ||||| |||| | |
Sbjct 9901383 GGATGCCTTCTTTGTCTTGGATC----TTTTGACATTCTCAATGGTGTCACTGGGCTCCA 9901328
Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| ||||| || || || || || || | || || ||||| || |||||
Sbjct 9901327 CTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/230 (68%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| | || | |||||||||| || |||||||| || || ||||| ||||||
Sbjct 9900822 CCACCTCTGAGACGAAGGACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900763
Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262
| || | || |||| ||||| || ||| || || | |||||||| | ||
Sbjct 9900762 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 9900703
Query 33263 ATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319
||||||||||| || | | ||||| || || | | ||| ||||| |||| |
Sbjct 9900702 ATGCCTTCTTTGTCTTGGATCTTCGCC---TTGACATTCTCAATGGTGTCACTGGGCTCT 9900646
Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || || || || || || | || || ||||| || |||||
Sbjct 9900645 ACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318770194995588
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |