Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq71 107 2e-18 seq48 107 2e-18 seq8 98.7 9e-16 >seq71 Length=13082442 Score = 107 bits (118), Expect = 2e-18 Identities = 342/518 (66%), Gaps = 28/518 (5%) Strand=Plus/Minus Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 |||||| || | ||| | |||||||| ||||||||| || ||||||| || || || Sbjct 3040233 TCTGTCTGCTAAAAA-TGAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATCAACTT 3040175 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 |||| || || | ||| ||| | | |||| | | | || | ||| | ||| Sbjct 3040174 CACAGTCAAAGTCACGATTAGAAACTCCTGTTCTGTTCTAGCAGCATTGATGATTAT--- 3040118 Query 13102 TCTTATTACGTTCTCTAATGGAGGATT---TGATAGATGCTTAAACATCATACATGCAAA 13158 || | || | || || || ||| || | |||| || || ||||| || | || Sbjct 3040117 TCATTTTGCTTTTTCCTCTGAAGGTTTGCTTAATAGTTGTTTGAACATTGAGCAGGTGAA 3040058 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 |||||| || | |||||| |||| || || || || ||||| | || || |||| Sbjct 3040057 GCCACAGTATAAACTCTCATCTTTACTAATAAGTTCATTGGAAAAAGCTAAGCCAAGCAT 3039998 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 | ||| || || | ||| ||||| | | || ||| | ||||| | ||||||| Sbjct 3039997 TAAACCT---TTCTTGAGCCAGAATATCGATGTGAAAGAATCAGAAAAGA---TTCCTTC 3039944 Query 13279 AACTGCTGCAAACGCTATCAACCTTTCACCATACG-TACTATTTTTACTCTCTATCCACT 13337 ||| |||||||| |||| || | ||||||||| | | || ||| ||| | ||||| Sbjct 3039943 AACAGCTGCAAAGGCTACCACACATTCACCATATGTTGCTTCTTTGTCTC-CAATCCA-- 3039887 Query 13338 TTCTGGCCCAGT-TTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 || |||| ||||| | |||||| || | |||| || | || || | | Sbjct 3039886 -----GCACAGTCCAGCTTTCTTTTTAACACAAGGTAGTGTTTCAATGCCATTGAAGAGA 3039832 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 |||| |||| || |||| ||||||||| || || || || |||||||| ||| Sbjct 3039831 -AATTCCTTTCTTTTGAGTCTTTAATATAAGTGTCAAT-AAGGAG-ACTACATTTCAGAA 3039775 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 || | |||||| | | |||||||| ||||| ||||| Sbjct 3039774 TG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAAACA 3039739 >seq48 Length=16487017 Score = 107 bits (118), Expect = 2e-18 Identities = 100/126 (79%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| |||| || ||||| | |||||||| || Sbjct 7775838 TCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTG 7775779 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| | ||||| ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 7775778 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCT 7775719 Query 13295 ATCAAC 13300 | |||| Sbjct 7775718 A-CAAC 7775714 >seq8 Length=27308231 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || || || || || || || || || |||||||| |||| || ||| Sbjct 9728540 TCATCTCTGCTGATGAGTTCATTGGAGAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTA 9728599 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| |||||||||||||| || ||||| || || || ||||| || || ||||| || Sbjct 9728600 AGCCAGAATATAGCAGCAAAAGAGCCCGAGAAGAAAATCCCTTCCACAGCAGCAAATGCA 9728659 Query 13295 ATCAACCTTTCACC 13308 | || ||||| || Sbjct 9728660 ACCACTCTTTCTCC 9728673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430972388548212