Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq36 277 1e-69
seq208 118 7e-22
>seq36
Length=18184789
Score = 277 bits (306), Expect = 1e-69
Identities = 413/580 (71%), Gaps = 6/580 (1%)
Strand=Plus/Plus
Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447
|||||||| ||| || || | || |||||| | ||||| || | | |||| || |||
Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949
Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507
| ||||| |||||||||||||| ||||| || || || | || || || || | |||
Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009
Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567
|||||||| || || || |||| ||||| ||||| || || ||||| | ||||| ||
Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069
Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627
|| || | |||||| |||||||| || ||||| | | || || |||||||| |
Sbjct 7686070 TCCA-GATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGA 7686128
Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687
| || ||| ||||| | || || || | |||||||| ||||| || |||| |
Sbjct 7686129 GAGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAA 7686188
Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747
|||| | ||||| | || ||| |||| || | ||||| || |||||||
Sbjct 7686189 TGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCA 7686248
Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807
| || || || || |||| |||| || |||| ||||| || |||| |||||||
Sbjct 7686249 CTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACT 7686308
Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCT-GTGCTCAAAGCCCCT-CTTATC 25865
|||| || ||||| ||||| | ||||| || || || || | || ||||| ||| ||
Sbjct 7686309 GGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAA--CCCCTGCTTGTC 7686366
Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925
||||||||||| || ||||||||||||||||| ||||| || || | |||||||| ||
Sbjct 7686367 CAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTT 7686426
Query 25926 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965
| |||||||| || | | ||||||||||||||| ||
Sbjct 7686427 AGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCC 7686466
>seq208
Length=5466430
Score = 118 bits (130), Expect = 7e-22
Identities = 131/171 (77%), Gaps = 4/171 (2%)
Strand=Plus/Minus
Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831
|||| || |||| ||||| || |||| ||||||||||| || || || ||||| | |
Sbjct 1460261 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAAT 1460202
Query 25832 CTCCATCTTCCCTG-TGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGC 25889
|||| || || ||| | | || ||||| ||| ||||||||||||| || ||||||||
Sbjct 1460201 CTCCTTCCTCTCTGGTAGTGAA--CCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGC 1460144
Query 25890 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
||||||||| ||||| || || | |||||||| || | |||||||| ||
Sbjct 1460143 GTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 1460093
Score = 84.2 bits (92), Expect = 1e-11
Identities = 119/166 (72%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549
||| || || | || ||| |||||||| || || || |||| ||||||||||| || ||
Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556
Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC 25609
|| |||| ||||| | | || || | |||||| |||||||| || ||||| | |
Sbjct 1463555 CACTCCGAGGCCCATAT-CTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCA 1463497
Query 25610 TCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
|| || |||||||| | | || ||| ||||| || || || ||
Sbjct 1463496 ATACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAG 1463451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340129698816138
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |