Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq36 277 1e-69 seq208 118 7e-22 >seq36 Length=18184789 Score = 277 bits (306), Expect = 1e-69 Identities = 413/580 (71%), Gaps = 6/580 (1%) Strand=Plus/Plus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| ||| || || | || |||||| | ||||| || | | |||| || ||| Sbjct 7685891 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAATTTTCAGTGGCCCAATATGATTCAAGTA 7685949 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | ||||| |||||||||||||| ||||| || || || | || || || || | ||| Sbjct 7685950 TATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGGCCTGTGACATGAGC 7686009 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||| || || || |||| ||||| ||||| || || ||||| | ||||| || Sbjct 7686010 AATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACCCCAAGGCCCATATC 7686069 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 || || | |||||| |||||||| || ||||| | | || || |||||||| | Sbjct 7686070 TCCA-GATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGACAGA 7686128 Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687 | || ||| ||||| | || || || | |||||||| ||||| || |||| | Sbjct 7686129 GAGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGATTCCAAGCACACATAA 7686188 Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747 |||| | ||||| | || ||| |||| || | ||||| || ||||||| Sbjct 7686189 TGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCAATGACTTTTTGTAGTTGATCCA 7686248 Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807 | || || || || |||| |||| || |||| ||||| || |||| ||||||| Sbjct 7686249 CTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACT 7686308 Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCT-GTGCTCAAAGCCCCT-CTTATC 25865 |||| || ||||| ||||| | ||||| || || || || | || ||||| ||| || Sbjct 7686309 GGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTGGTAGTGAA--CCCCTGCTTGTC 7686366 Query 25866 CAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTT 25925 ||||||||||| || ||||||||||||||||| ||||| || || | |||||||| || Sbjct 7686367 CAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTT 7686426 Query 25926 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCC 25965 | |||||||| || | | ||||||||||||||| || Sbjct 7686427 AGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCC 7686466 >seq208 Length=5466430 Score = 118 bits (130), Expect = 7e-22 Identities = 131/171 (77%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || |||| ||||| || |||| ||||||||||| || || || ||||| | | Sbjct 1460261 TCATCTCTTTGTATTCTGCCCCAAAATGTCTCCACTGGAAGCCATATACAGGTCCCAAAT 1460202 Query 25832 CTCCATCTTCCCTG-TGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGC 25889 |||| || || ||| | | || ||||| ||| ||||||||||||| || |||||||| Sbjct 1460201 CTCCTTCCTCTCTGGTAGTGAA--CCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGC 1460144 Query 25890 GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 ||||||||| ||||| || || | |||||||| || | |||||||| || Sbjct 1460143 GTCCCAGATTTTTACTCCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACC 1460093 Score = 84.2 bits (92), Expect = 1e-11 Identities = 119/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| || || | || ||| |||||||| || || || |||| ||||||||||| || || Sbjct 1463615 TAGGCCTGTGATGTGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGG 1463556 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC 25609 || |||| ||||| | | || || | |||||| |||||||| || ||||| | | Sbjct 1463555 CACTCCGAGGCCCATAT-CTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCA 1463497 Query 25610 TCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 || || |||||||| | | || ||| ||||| || || || || Sbjct 1463496 ATACATAGAACTGACAGAGAGCGTGGCATGGAGGCAGTGCCATCAG 1463451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340129698816138