Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq36 109 7e-19 >seq36 Length=18184789 Score = 109 bits (120), Expect = 7e-19 Identities = 274/411 (67%), Gaps = 8/411 (2%) Strand=Plus/Plus Query 6829 ATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATA 6888 ||||||| || || |||||||||||||| || || || | ||| |||||||| |||| Sbjct 7685936 ATATGATTCAAGTATATATGAGCATCTCCCAGAGTGTGTACAAAATCACCTGGCTTCAGG 7685995 Query 6889 TCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACA 6948 | | |||||||| | || |||| | | ||| || | || || || || Sbjct 7685996 CCTGTGACATGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTGAACGGCACC 7686055 Query 6949 CCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAA---AATATTGTCTATA 7005 || | ||||||||| | |||| || || |||||||| | | ||| | ||| Sbjct 7686056 CCAAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATT--CAATA 7686113 Query 7006 GCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGA 7065 |||| || ||||| | | || ||||||||||| | | || | ||| ||| Sbjct 7686114 -CATAGAACTGACAGAGAGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCTTTAGGA 7686172 Query 7066 TTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGT-TATAAT 7124 ||||||||| ||| | || | ||| |||| ||| ||| |||| ||| ||| || | Sbjct 7686173 TTCCAAGCACACATAATGATCCTTCTGTCATGAGGA-TTGGTTTTGATTGTGTCAATGAC 7686231 Query 7125 TATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGC 7184 | |||||| |||||| | || || || ||||| |||| | | | || | || Sbjct 7686232 TTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTATTCTGC 7686291 Query 7185 TCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTC 7235 |||||||||||||| || || ||||| | || || ||||| ||||| || Sbjct 7686292 CCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTC 7686342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595857803349600