Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq5 89.7 3e-13
seq214 82.4 4e-11
seq203 82.4 4e-11
seq168 82.4 4e-11
>seq5
Length=36077823
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/85 (84%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
|||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 31371562 AAAAGCAAAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 31371504
Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530
||| |||||||||||||| |||||
Sbjct 31371503 TCTAACCAACTGAGCTAACCGGCCG 31371479
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| |||||||||| ||||||| ||||||||||||| ||||||| ||||||
Sbjct 31448532 TGGCCCATACGGGGATCGAACCCGCGACCTTAGCGTTATTAGCACCACGCTCTAACCAAC 31448473
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 31448472 TGAGCTAACAGGCC 31448459
Score = 84.2 bits (92), Expect = 1e-11
Identities = 56/63 (89%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 31434630 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31434689
Query 11528 CCG 11530
|||
Sbjct 31434690 CCG 31434692
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 31378276 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 31378217
Query 11528 CC 11529
||
Sbjct 31378216 CC 31378215
>seq214
Length=5114606
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 4310140 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4310081
Query 11528 CC 11529
||
Sbjct 4310080 CC 4310079
>seq203
Length=5514706
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 823025 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 822966
Query 11528 CC 11529
||
Sbjct 822965 CC 822964
>seq168
Length=7028291
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 4881273 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4881214
Query 11528 CC 11529
||
Sbjct 4881213 CC 4881212
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261485125722856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |