Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq17 143 4e-29 seq178 107 3e-18 >seq17 Length=22518727 Score = 143 bits (158), Expect = 4e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088 |||||||||||||||||| |||| |||||||| ||||||| || ||| |||| Sbjct 12062828 CTTACCCCATGTCCCAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGGTCTGTCTTAAAG 12062887 Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148 |||||||| |||||||||||| |||| || |||||||| | || ||||| |||||||| Sbjct 12062888 AACTGGTGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 12062947 Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAttt 10208 ||| | || |||||| |||||| ||||||||||| | | | || || || | | Sbjct 12062948 GGAATAAACTTCCTCCTCAGAAGAAATTTTTCCACAATCTCTTTGGATTCAGGAAGCTGT 12063007 Query 10209 tttttACCT 10217 ||||||||| Sbjct 12063008 TTTTTACCT 12063016 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || ||| |||||| |||||||| |||| || | || |||||| Sbjct 12061307 GTCTGGAACAACTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACACT 12061366 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 | ||| ||||||| ||||| || ||||| |||||||| | ||| || ||||||||||| Sbjct 12061367 CGGTTATGTTCCCGAAGCCATATTGTAGCATACATCATCAAACCTGGAACCAGGCCAAAT 12061426 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | ||||| || ||||| | | || || || || || | || || |||||||| | Sbjct 12061427 ACTTCTTGCCCAACAGCAAATCTCAGATGCTCAGGGACATGAGGTGGGTAGATCATTTCT 12061486 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||| |||||| || |||| ||||| | ||| || ||||| Sbjct 12061487 GCCTGCGTATCTTTCACTAAGGGCGGATATACTTCTCCATCAAT 12061530 >seq178 Length=6490125 Score = 107 bits (118), Expect = 3e-18 Identities = 185/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || ||||| | | | | ||||| |||||| ||| ||| ||||| ||| | Sbjct 5540753 GGTACACGGAATGAGACATAGGGACATGTTTTGACATTGAGACAAACTAGTTTCTGCAAT 5540812 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 || || ||||||| || || || || || || || ||||| || |||||||| Sbjct 5540813 GTGGCTGTCTTGACAATATTGAAGCCAGTCTCACCACCAAATGTGCTTGGCTTCCAGTAC 5540872 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | || || || ||| |||| ||| ||| ||||||||||| || || ||||| | ||| Sbjct 5540873 TCAGGAGAACATATGGGGTTCCCCAAGAGCCCTTTGAGGGAGAAGGGGGCCCCAATCTCC 5540932 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | |||||||| || ||||| | || || | | || || | | || || | ||| Sbjct 5540933 ACCATGCTCTCCCCAAAGATAGAATTAGGCAGAGATTTCTCTAGAAGTAAGCCTGGGTAG 5540992 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||||| ||| ||||||||||| || || Sbjct 5540993 AACTCCAAAGCATCGATGTCTCCATATAG 5541021 Score = 87.8 bits (96), Expect = 3e-12 Identities = 171/253 (68%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||||| || |||||||| || || || ||| |||| || || Sbjct 5550529 TCACCTATGAGGATGAGTCTGGTCGTCTGAAAGAGCTGCTCATCATTCCAGGTGGGGTGC 5550588 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || | || | || || || | ||||||||||| |||||||| ||||| |||| | Sbjct 5550589 TCAGCTCGCAAGAGGTCACAGACACGGTTGTGTTCCCGAAGCCAGATTGTAGCATACACC 5550648 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 ||||| || || | || ||||| |||| || || || |||| | | |||| ||| Sbjct 5550649 ATGAGGCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGTTGAGTTTCAGGC 5550708 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | | ||| || |||||| ||| || || || || || |||||||| || Sbjct 5550709 ACATTTGCAGGGTACTTCATGTACACATGAGTCTCAGCCACTGATGGTGGATACATCTCC 5550768 Query 9850 CCGTCAATAATCT 9862 || || | |||| Sbjct 5550769 CCATCCACCATCT 5550781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708507919396640