Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq17 143 4e-29
seq178 107 3e-18
>seq17
Length=22518727
Score = 143 bits (158), Expect = 4e-29
Identities = 145/189 (77%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAAA 10088
|||||||||||||||||| |||| |||||||| ||||||| || ||| ||||
Sbjct 12062828 CTTACCCCATGTCCCAGTGCTTTTGTGAAGGCTGGGCCTCTGTGATGGTCTGTCTTAAAG 12062887
Query 10089 AACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATCG 10148
|||||||| |||||||||||| |||| || |||||||| | || ||||| ||||||||
Sbjct 12062888 AACTGGTGAGTGAAATGTTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATCA 12062947
Query 10149 GGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAttt 10208
||| | || |||||| |||||| ||||||||||| | | | || || || | |
Sbjct 12062948 GGAATAAACTTCCTCCTCAGAAGAAATTTTTCCACAATCTCTTTGGATTCAGGAAGCTGT 12063007
Query 10209 tttttACCT 10217
|||||||||
Sbjct 12063008 TTTTTACCT 12063016
Score = 134 bits (148), Expect = 2e-26
Identities = 164/224 (73%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || ||| |||||| |||||||| |||| || | || ||||||
Sbjct 12061307 GTCTGGAACAACTGCTCATCATCCCATTCAGGATGTTCCTGTTTAAGGATGTCACACACT 12061366
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
| ||| ||||||| ||||| || ||||| |||||||| | ||| || |||||||||||
Sbjct 12061367 CGGTTATGTTCCCGAAGCCATATTGTAGCATACATCATCAAACCTGGAACCAGGCCAAAT 12061426
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| ||||| || ||||| | | || || || || || | || || |||||||| |
Sbjct 12061427 ACTTCTTGCCCAACAGCAAATCTCAGATGCTCAGGGACATGAGGTGGGTAGATCATTTCT 12061486
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857
|||| |||||| || |||| ||||| | ||| || |||||
Sbjct 12061487 GCCTGCGTATCTTTCACTAAGGGCGGATATACTTCTCCATCAAT 12061530
>seq178
Length=6490125
Score = 107 bits (118), Expect = 3e-18
Identities = 185/269 (69%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731
|| || ||||| | | | | ||||| |||||| ||| ||| ||||| ||| |
Sbjct 5540753 GGTACACGGAATGAGACATAGGGACATGTTTTGACATTGAGACAAACTAGTTTCTGCAAT 5540812
Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791
|| || ||||||| || || || || || || || ||||| || ||||||||
Sbjct 5540813 GTGGCTGTCTTGACAATATTGAAGCCAGTCTCACCACCAAATGTGCTTGGCTTCCAGTAC 5540872
Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851
| || || || ||| |||| ||| ||| ||||||||||| || || ||||| | |||
Sbjct 5540873 TCAGGAGAACATATGGGGTTCCCCAAGAGCCCTTTGAGGGAGAAGGGGGCCCCAATCTCC 5540932
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| |||||||| || ||||| | || || | | || || | | || || | |||
Sbjct 5540933 ACCATGCTCTCCCCAAAGATAGAATTAGGCAGAGATTTCTCTAGAAGTAAGCCTGGGTAG 5540992
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940
||||||| ||| ||||||||||| || ||
Sbjct 5540993 AACTCCAAAGCATCGATGTCTCCATATAG 5541021
Score = 87.8 bits (96), Expect = 3e-12
Identities = 171/253 (68%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| || || | |||||||| || |||||||| || || || ||| |||| || ||
Sbjct 5550529 TCACCTATGAGGATGAGTCTGGTCGTCTGAAAGAGCTGCTCATCATTCCAGGTGGGGTGC 5550588
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| | || | || || || | ||||||||||| |||||||| ||||| |||| |
Sbjct 5550589 TCAGCTCGCAAGAGGTCACAGACACGGTTGTGTTCCCGAAGCCAGATTGTAGCATACACC 5550648
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789
||||| || || | || ||||| |||| || || || |||| | | |||| |||
Sbjct 5550649 ATGAGGCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGTTGAGTTTCAGGC 5550708
Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849
|| | | ||| || |||||| ||| || || || || || |||||||| ||
Sbjct 5550709 ACATTTGCAGGGTACTTCATGTACACATGAGTCTCAGCCACTGATGGTGGATACATCTCC 5550768
Query 9850 CCGTCAATAATCT 9862
|| || | ||||
Sbjct 5550769 CCATCCACCATCT 5550781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708507919396640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |