Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-32 seq168 147 3e-31 seq701 123 4e-24 seq367 120 5e-23 seq132 84.2 3e-12 >seq5 Length=36077823 Score = 150 bits (166), Expect = 3e-32 Identities = 185/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || ||||| |||||||| || || || Sbjct 31516365 CTCCGCGATAACATCCAGGGTATCACCAAGCCTGCCATCCGCCGTCTGGCCCGGCGCGGC 31516424 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 31516425 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31516484 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 31516485 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31516544 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| || | || || || ||||| | | | ||||| || ||| Sbjct 31516545 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGGACGCTCTATGGCTTCGGA 31516604 Query 16694 AGTTAATCTTCTA 16706 | ||| ||||| Sbjct 31516605 GGCTAAATTTCTA 31516617 Score = 150 bits (166), Expect = 3e-32 Identities = 181/246 (74%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || |||||||||||||| || || || Sbjct 31683080 CTCCGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCCCGGCGCGGC 31683139 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 31683140 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31683199 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 31683200 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31683259 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| ||| | || || || ||||| | | ||||| || || Sbjct 31683260 ACTGCCATGGACGTGGTCTACGCACTCAAGCGCCAGGGCCGGACCCTCTATGGCTTCGGC 31683319 Query 16694 AGTTAA 16699 ||||| Sbjct 31683320 GGTTAA 31683325 Score = 147 bits (162), Expect = 3e-31 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || |||||||||||||| || || || Sbjct 31606358 CTCCGCGATAACATCCAGGGTATCACCAAGCCTGCCATCCGTCGTCTGGCCCGGCGCGGC 31606417 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 31606418 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31606477 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 31606478 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31606537 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | |||||| | ||||| ||| | || || || ||||| Sbjct 31606538 ACTGCTATGGATGTGGTCTACGCACTCAAGCGCCAGGGCCG 31606578 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||||||||| || |||||||||||||| || || || Sbjct 31504871 CTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCCCGGCGCGGC 31504930 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 31504931 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31504990 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 31504991 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31505050 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | ||||| || | || || || ||||| Sbjct 31505051 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 31505091 Score = 141 bits (156), Expect = 1e-29 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| || || || |||||||||||||| || || || Sbjct 31616661 CTCCGCGATAACATCCAGGGCATCACTAAACCTGCCATCCGTCGTCTGGCCCGGCGCGGC 31616720 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 31616721 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31616780 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 31616781 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31616840 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | ||||| ||| | || || || ||||| | | | || || || || Sbjct 31616841 ACTGCCATGGACGTGGTCTACGCACTCAAGCGCCAGGGCCGGACGCTCTACGGCTTCGGC 31616900 Query 16694 AGTTAA 16699 ||||| Sbjct 31616901 GGTTAA 31616906 Score = 138 bits (152), Expect = 2e-28 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || |||||||||||||| || ||||| ||||| || ||||| |||||||| || || || Sbjct 31532258 CTCCGAGATAACATCCAGGGCATCACTAAGCCCGCCATCCGCCGTCTGGCCCGGCGCGGC 31532199 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || | |||| || |||| || | || ||||| | ||| Sbjct 31532198 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31532139 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| || || || ||| ||||||||||| || | ||||| ||| Sbjct 31532138 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31532079 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | ||||| || | || || || ||||| Sbjct 31532078 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 31532038 >seq168 Length=7028291 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || |||||||||||||| ||||||||||| || || |||||||| ||||| || || Sbjct 2461782 CTGCGGGATAACATCCAAGGCATCACCAAGCCTGCCATTCGTCGTCTTGCTCGGCGCGGC 2461723 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| |||| || | ||||||| || | |||| || | ||| | ||| Sbjct 2461722 GGCGTCAAGCGGATCTCGGGGCTCATCTATGAGGAAACCCGTGGGGTGCTCAAGGTATTC 2461663 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||||||| ||||| | || || ||||||||||| | ||||||||| Sbjct 2461662 TTGGAGAATGTTATCCGGGATGCCGTGACTTACACTGAGCACGCTAAGAGGAAGACTGTC 2461603 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || | ||||| | || |||||| | |||||||| ||||| | | |||||||| || Sbjct 2461602 ACTGCAATGGACGTGGTGTATGCACTCAAACGTCAGGGCCGAACTCTCTATGGTTTCGG 2461544 Score = 123 bits (136), Expect = 4e-24 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||| ||||| || ||||||||||| || ||||| || ||||||| || ||||| || Sbjct 2291057 GATAATATCCAGGGCATCACCAAGCCTGCCATCCGCCGCTTGGCTCGACGGGGTGGCGTT 2290998 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | || || | |||| || |||| || | || | ||| ||||| | || Sbjct 2290997 AAGCGCATTTCGGGTCTTATCTACGAGGAGACCCGCGGAGTGCTCAAGGTCTTCTTAGAG 2290938 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || | ||| || |||||||| || | ||||| |||||| || Sbjct 2290937 AACGTGATCCGTGACGCCGTTACCTACACGGAGCACGCCAAGAGGAAGACCGTCACCGCC 2290878 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||||| | ||||| || | ||||| || ||||| | | |||| || || || Sbjct 2290877 ATGGACGTGGTCTACGCCCTCAAACGCCAGGGCCGCACGCTTTACGGCTTCGG 2290825 Score = 116 bits (128), Expect = 6e-22 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16466 ATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525 ||||| || ||||||||||| || ||||| || ||||||| || ||||| || ||||| Sbjct 2317697 ATCCAGGGCATCACCAAGCCTGCCATCCGCCGCTTGGCTCGACGGGGTGGCGTTAAGCGC 2317756 Query 16526 GTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585 | || || | |||| || |||| || | || | ||| ||||| | ||| ||| Sbjct 2317757 ATTTCGGGTCTTATCTACGAGGAGACCCGCGGAGTGCTCAAGGTCTTCTTAGAGAACGTG 2317816 Query 16586 ATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645 |||| ||| || | ||| || |||||||| || | ||||| |||||| ||||||| Sbjct 2317817 ATCCGTGACGCCGTTACCTACACGGAGCACGCCAAGAGGAAGACCGTCACCGCCATGGAC 2317876 Query 16646 ATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | ||||| || | ||||| || ||||| | | |||| || || || Sbjct 2317877 GTGGTCTACGCCCTCAAACGCCAGGGCCGCACGCTTTACGGCTTCGG 2317923 >seq701 Length=45252 Score = 123 bits (136), Expect = 4e-24 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || ||||| || ||||||| ||||| Sbjct 32561 CTGCGGGATAACATCCAGGGCATCACTAAGCCTGCCATCCGCCGCTTGGCTCGGCGTGGG 32620 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || ||||||| |||| || | || ||||| | || Sbjct 32621 GGTGTGAAGCGAATCTCGGGGCTGATCTATGAGGAGACCCGCGGAGTGCTGAAGGTGTTT 32680 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || || || |||||||| || | ||||||||| Sbjct 32681 TTGGAGAACGTGATCCGGGACGCCGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 32740 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || ||||||| | || ||||| | || || || ||||| | | || || ||||| Sbjct 32741 ACGGCCATGGACGTGGTGTATGCTCTCAAGCGCCAGGGCCGCACTCTCTACGGCTTTGGC 32800 Query 16694 AGTTAATC 16701 | ||||| Sbjct 32801 GGCTAATC 32808 >seq367 Length=1294591 Score = 120 bits (132), Expect = 5e-23 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || ||||| ||||| || ||||| || ||||||| ||||| Sbjct 19573 CTGCGGGATAACATCCAGGGCATCACTAAGCCTGCCATCCGCCGCTTGGCTCGGCGTGGG 19632 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || ||||||| |||| || | || ||||| | || Sbjct 19633 GGTGTGAAGCGAATCTCGGGGCTGATCTATGAGGAGACCCGCGGAGTGCTGAAGGTGTTT 19692 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| || |||| || || || || || |||||||| || | ||||||||| Sbjct 19693 TTGGAGAATGTGATCCGGGACGCCGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 19752 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || |||||||| | ||||| || | || || || ||||| | | || || ||||| Sbjct 19753 ACGGCCATGGATGTGGTCTACGCTCTCAAGCGCCAGGGCCGCACTCTCTACGGCTTTGG 19811 Score = 116 bits (128), Expect = 6e-22 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || || |||||||| || || || || |||| || ||||| Sbjct 29577 CTGCGTGATAACATCCAGGGCATTACCAAGCCTGCCATTCGGCGCTTGGCACGGCGTGGG 29636 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| |||| || ||||| | || Sbjct 29637 GGTGTGAAGCGAATCTCGGGGCTGATCTACGAGGAGACCCGTGGGGTGCTGAAGGTGTTT 29696 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | ||| ||| |||| || || || || || |||||||| || | ||||||||| Sbjct 29697 TTGGAGAACGTGATCCGGGACGCCGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 29756 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | ||||| || | || || || ||||| | | || |||||||| Sbjct 29757 ACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGCCGCACTCTCTACGGTTTTGG 29815 >seq132 Length=8869828 Score = 84.2 bits (92), Expect = 3e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || ||||||| |||||| | || ||||| ||| Sbjct 7253748 GATAACATCCAGGGCATCACCAAGCCTGCCATCCGTCATCTGGCCTGGCGCGGTGGCGTC 7253689 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||| |||| || | |||| || |||| Sbjct 7253688 AAGCGTATCTCGGGGCTCATCTACGAGGAGA 7253658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073457330858