Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq5 150 3e-32
seq168 147 3e-31
seq701 123 4e-24
seq367 120 5e-23
seq132 84.2 3e-12
>seq5
Length=36077823
Score = 150 bits (166), Expect = 3e-32
Identities = 185/253 (73%), Gaps = 0/253 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||||||||| || ||||| |||||||| || || ||
Sbjct 31516365 CTCCGCGATAACATCCAGGGTATCACCAAGCCTGCCATCCGCCGTCTGGCCCGGCGCGGC 31516424
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| || | || ||||| | |||
Sbjct 31516425 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31516484
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 31516485 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31516544
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| ||||||| | ||||| || | || || || ||||| | | | ||||| || |||
Sbjct 31516545 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCGGACGCTCTATGGCTTCGGA 31516604
Query 16694 AGTTAATCTTCTA 16706
| ||| |||||
Sbjct 31516605 GGCTAAATTTCTA 31516617
Score = 150 bits (166), Expect = 3e-32
Identities = 181/246 (74%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||||||||| || |||||||||||||| || || ||
Sbjct 31683080 CTCCGGGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCCCGGCGCGGC 31683139
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| || | || ||||| | |||
Sbjct 31683140 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31683199
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 31683200 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31683259
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| ||||||| | ||||| ||| | || || || ||||| | | ||||| || ||
Sbjct 31683260 ACTGCCATGGACGTGGTCTACGCACTCAAGCGCCAGGGCCGGACCCTCTATGGCTTCGGC 31683319
Query 16694 AGTTAA 16699
|||||
Sbjct 31683320 GGTTAA 31683325
Score = 147 bits (162), Expect = 3e-31
Identities = 165/221 (75%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||||||||| || |||||||||||||| || || ||
Sbjct 31606358 CTCCGCGATAACATCCAGGGTATCACCAAGCCTGCCATCCGTCGTCTGGCCCGGCGCGGC 31606417
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| || | || ||||| | |||
Sbjct 31606418 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31606477
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 31606478 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31606537
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | |||||| | ||||| ||| | || || || |||||
Sbjct 31606538 ACTGCTATGGATGTGGTCTACGCACTCAAGCGCCAGGGCCG 31606578
Score = 141 bits (156), Expect = 1e-29
Identities = 164/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||||||||| || |||||||||||||| || || ||
Sbjct 31504871 CTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCCCGGCGCGGC 31504930
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| || | || ||||| | |||
Sbjct 31504931 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31504990
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 31504991 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31505050
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| ||||||| | ||||| || | || || || |||||
Sbjct 31505051 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 31505091
Score = 141 bits (156), Expect = 1e-29
Identities = 179/246 (73%), Gaps = 0/246 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||| || || || |||||||||||||| || || ||
Sbjct 31616661 CTCCGCGATAACATCCAGGGCATCACTAAACCTGCCATCCGTCGTCTGGCCCGGCGCGGC 31616720
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| || | || ||||| | |||
Sbjct 31616721 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31616780
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 31616781 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31616840
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| ||||||| | ||||| ||| | || || || ||||| | | | || || || ||
Sbjct 31616841 ACTGCCATGGACGTGGTCTACGCACTCAAGCGCCAGGGCCGGACGCTCTACGGCTTCGGC 31616900
Query 16694 AGTTAA 16699
|||||
Sbjct 31616901 GGTTAA 31616906
Score = 138 bits (152), Expect = 2e-28
Identities = 163/221 (74%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| |||||||||||||| || ||||| ||||| || ||||| |||||||| || || ||
Sbjct 31532258 CTCCGAGATAACATCCAGGGCATCACTAAGCCCGCCATCCGCCGTCTGGCCCGGCGCGGC 31532199
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| ||||||||| |||| || | |||| || |||| || | || ||||| | |||
Sbjct 31532198 GGCGTCAAGCGTATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTGAAGGTGTTC 31532139
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
|| ||| ||| |||| || || || ||| ||||||||||| || | ||||| |||
Sbjct 31532138 CTGGAGAACGTGATCCGGGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACGGTC 31532079
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| ||||||| | ||||| || | || || || |||||
Sbjct 31532078 ACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGGCCG 31532038
>seq168
Length=7028291
Score = 147 bits (162), Expect = 3e-31
Identities = 176/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || |||||||||||||| ||||||||||| || || |||||||| ||||| || ||
Sbjct 2461782 CTGCGGGATAACATCCAAGGCATCACCAAGCCTGCCATTCGTCGTCTTGCTCGGCGCGGC 2461723
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| |||||||| |||| || | ||||||| || | |||| || | ||| | |||
Sbjct 2461722 GGCGTCAAGCGGATCTCGGGGCTCATCTATGAGGAAACCCGTGGGGTGCTCAAGGTATTC 2461663
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| ||||||| ||||| | || || ||||||||||| | |||||||||
Sbjct 2461662 TTGGAGAATGTTATCCGGGATGCCGTGACTTACACTGAGCACGCTAAGAGGAAGACTGTC 2461603
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||||| | || |||||| | |||||||| ||||| | | |||||||| ||
Sbjct 2461602 ACTGCAATGGACGTGGTGTATGCACTCAAACGTCAGGGCCGAACTCTCTATGGTTTCGG 2461544
Score = 123 bits (136), Expect = 4e-24
Identities = 167/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||| ||||| || ||||||||||| || ||||| || ||||||| || ||||| ||
Sbjct 2291057 GATAATATCCAGGGCATCACCAAGCCTGCCATCCGCCGCTTGGCTCGACGGGGTGGCGTT 2290998
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| | || || | |||| || |||| || | || | ||| ||||| | ||
Sbjct 2290997 AAGCGCATTTCGGGTCTTATCTACGAGGAGACCCGCGGAGTGCTCAAGGTCTTCTTAGAG 2290938
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| ||| |||| ||| || | ||| || |||||||| || | ||||| |||||| ||
Sbjct 2290937 AACGTGATCCGTGACGCCGTTACCTACACGGAGCACGCCAAGAGGAAGACCGTCACCGCC 2290878
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
||||| | ||||| || | ||||| || ||||| | | |||| || || ||
Sbjct 2290877 ATGGACGTGGTCTACGCCCTCAAACGCCAGGGCCGCACGCTTTACGGCTTCGG 2290825
Score = 116 bits (128), Expect = 6e-22
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 16466 ATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGT 16525
||||| || ||||||||||| || ||||| || ||||||| || ||||| || |||||
Sbjct 2317697 ATCCAGGGCATCACCAAGCCTGCCATCCGCCGCTTGGCTCGACGGGGTGGCGTTAAGCGC 2317756
Query 16526 GTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTT 16585
| || || | |||| || |||| || | || | ||| ||||| | ||| |||
Sbjct 2317757 ATTTCGGGTCTTATCTACGAGGAGACCCGCGGAGTGCTCAAGGTCTTCTTAGAGAACGTG 2317816
Query 16586 ATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGAT 16645
|||| ||| || | ||| || |||||||| || | ||||| |||||| |||||||
Sbjct 2317817 ATCCGTGACGCCGTTACCTACACGGAGCACGCCAAGAGGAAGACCGTCACCGCCATGGAC 2317876
Query 16646 ATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
| ||||| || | ||||| || ||||| | | |||| || || ||
Sbjct 2317877 GTGGTCTACGCCCTCAAACGCCAGGGCCGCACGCTTTACGGCTTCGG 2317923
>seq701
Length=45252
Score = 123 bits (136), Expect = 4e-24
Identities = 176/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||| ||||| || ||||| || ||||||| |||||
Sbjct 32561 CTGCGGGATAACATCCAGGGCATCACTAAGCCTGCCATCCGCCGCTTGGCTCGGCGTGGG 32620
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || ||||||| |||| || | || ||||| | ||
Sbjct 32621 GGTGTGAAGCGAATCTCGGGGCTGATCTATGAGGAGACCCGCGGAGTGCTGAAGGTGTTT 32680
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| ||| |||| || || || || || |||||||| || | |||||||||
Sbjct 32681 TTGGAGAACGTGATCCGGGACGCCGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 32740
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
|| ||||||| | || ||||| | || || || ||||| | | || || |||||
Sbjct 32741 ACGGCCATGGACGTGGTGTATGCTCTCAAGCGCCAGGGCCGCACTCTCTACGGCTTTGGC 32800
Query 16694 AGTTAATC 16701
| |||||
Sbjct 32801 GGCTAATC 32808
>seq367
Length=1294591
Score = 120 bits (132), Expect = 5e-23
Identities = 170/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || ||||| ||||| || ||||| || ||||||| |||||
Sbjct 19573 CTGCGGGATAACATCCAGGGCATCACTAAGCCTGCCATCCGCCGCTTGGCTCGGCGTGGG 19632
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || ||||||| |||| || | || ||||| | ||
Sbjct 19633 GGTGTGAAGCGAATCTCGGGGCTGATCTATGAGGAGACCCGCGGAGTGCTGAAGGTGTTT 19692
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| || |||| || || || || || |||||||| || | |||||||||
Sbjct 19693 TTGGAGAATGTGATCCGGGACGCCGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 19752
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| |||||||| | ||||| || | || || || ||||| | | || || |||||
Sbjct 19753 ACGGCCATGGATGTGGTCTACGCTCTCAAGCGCCAGGGCCGCACTCTCTACGGCTTTGG 19811
Score = 116 bits (128), Expect = 6e-22
Identities = 169/239 (71%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || ||||||||||| || || |||||||| || || || || |||| || |||||
Sbjct 29577 CTGCGTGATAACATCCAGGGCATTACCAAGCCTGCCATTCGGCGCTTGGCACGGCGTGGG 29636
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || |||| || |||| |||| || ||||| | ||
Sbjct 29637 GGTGTGAAGCGAATCTCGGGGCTGATCTACGAGGAGACCCGTGGGGTGCTGAAGGTGTTT 29696
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
| ||| ||| |||| || || || || || |||||||| || | |||||||||
Sbjct 29697 TTGGAGAACGTGATCCGGGACGCCGTCACTTACACGGAGCACGCCAAGAGGAAGACTGTC 29756
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| ||||||| | ||||| || | || || || ||||| | | || ||||||||
Sbjct 29757 ACGGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGCCGCACTCTCTACGGTTTTGG 29815
>seq132
Length=8869828
Score = 84.2 bits (92), Expect = 3e-12
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
||||||||||| || ||||||||||| || ||||||| |||||| | || ||||| |||
Sbjct 7253748 GATAACATCCAGGGCATCACCAAGCCTGCCATCCGTCATCTGGCCTGGCGCGGTGGCGTC 7253689
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||| |||| || | |||| || ||||
Sbjct 7253688 AAGCGTATCTCGGGGCTCATCTACGAGGAGA 7253658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79073457330858
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