Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq8 91.5 2e-13 >seq8 Length=27308231 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||| ||||| || | ||| ||||| ||| | ||| || ||||| | | | Sbjct 9722090 TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGCCATAACTGCAAAACG 9722149 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 || || || || |||||||| ||||||||||| || ||||||| || ||| ||| Sbjct 9722150 CTGGTATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 9722209 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||| |||||||| ||||| || || | ||| Sbjct 9722210 CATGAAATCAAAGGGATTATCTGACTGAAA 9722239 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 21475 ACATGCAAAATCACAATGCAAACCTT----CATCCCTACTTATTAATTCATTAGAAAATG 21530 |||| || ||| | ||| || ||||| |||| || || || | |||||| || || | Sbjct 9728512 ACAT-CACAATTAGAATTCATACCTTACCTCATCTCTGCTGATGAGTTCATTGGAGAAAG 9728570 Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAA 21590 | | || ||||| | |||||||| || | ||| ||||| | ||||| | || || | Sbjct 9728571 TGAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCAGCAAAAGAGCCCGAGA 9728630 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 ||||||| || || || |||||||||||||| | || ||| || Sbjct 9728631 AGAAAATCCCTTCCACAGCAGCAAATGCAACCACTCTTTCTCC 9728673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531888127463440