Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq8 91.5 2e-13
>seq8
Length=27308231
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186
||||||||| ||||| || | ||| ||||| ||| | ||| || ||||| | | |
Sbjct 9722090 TTAAAAATCTGCATCCAAGGTGAAGACATTGTCTGTTGTTTCTGCCATAACTGCAAAACG 9722149
Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246
|| || || || |||||||| ||||||||||| || ||||||| || ||| |||
Sbjct 9722150 CTGGTATTCTGAGACCCTTTTTTCAAAAAAATTTGTTTTCCCTTCCAGAGAAATATTTTC 9722209
Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAA 21276
||| |||||||| ||||| || || | |||
Sbjct 9722210 CATGAAATCAAAGGGATTATCTGACTGAAA 9722239
Score = 87.8 bits (96), Expect = 2e-12
Identities = 118/163 (72%), Gaps = 5/163 (3%)
Strand=Plus/Plus
Query 21475 ACATGCAAAATCACAATGCAAACCTT----CATCCCTACTTATTAATTCATTAGAAAATG 21530
|||| || ||| | ||| || ||||| |||| || || || | |||||| || || |
Sbjct 9728512 ACAT-CACAATTAGAATTCATACCTTACCTCATCTCTGCTGATGAGTTCATTGGAGAAAG 9728570
Query 21531 TTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAA 21590
| | || ||||| | |||||||| || | ||| ||||| | ||||| | || || |
Sbjct 9728571 TGAGTCCAGGCATAAGACCTCTCTTCTTAAGCCAGAATATAGCAGCAAAAGAGCCCGAGA 9728630
Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACC 21633
||||||| || || || |||||||||||||| | || ||| ||
Sbjct 9728631 AGAAAATCCCTTCCACAGCAGCAAATGCAACCACTCTTTCTCC 9728673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531888127463440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |