Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq71 165 1e-35 seq48 120 4e-22 seq179 118 1e-21 >seq71 Length=13082442 Score = 165 bits (182), Expect = 1e-35 Identities = 332/478 (69%), Gaps = 22/478 (5%) Strand=Plus/Minus Query 33283 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATT 33342 |||| ||||| ||||| | || | ||| | |||| | || ||| ||| ||||||| Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027 Query 33343 AGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAA 33402 ||||| |||||||| | | || |||||| || || || ||||| ||||| || Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970 Query 33403 GCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCA 33462 | ||| || ||||||||| ||||||| || || |||||||| | | | || ||| Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913 Query 33463 TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 33521 || | ||| ||| |||| | ||| || || || |||||||| |||||||| Sbjct 3039912 TAT--GTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857 Query 33522 CATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 | ||||| ||| |||| |||||| | || |||| || ||||||| |||||| || Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798 Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 || | |||||| |||||| ||||| ||||||| ||| || || || || ||||| Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742 Query 33642 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCAC 33701 ||| | || | ||| ||||||| || | | | | | |||| ||| |||| || Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTAC 3039683 Query 33702 TATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 33755 | | || || ||| |||||||| || ||||||||||| | |||| |||||| |||| Sbjct 3039682 TCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626 >seq48 Length=16487017 Score = 120 bits (132), Expect = 4e-22 Identities = 99/121 (82%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||||||||| ||||| |||||||| || | ||| ||||||| || || || | Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| |||||||| || || || |||||||||||||||||||| || || ||||| | Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721 Query 33446 C 33446 | Sbjct 7775720 C 7775720 Score = 100 bits (110), Expect = 4e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || |||| |||||| || || | |||||||||||||| ||||| |||||||| || || Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 33669 || ||||| || |||||||| | ||| || || |||||||||||| Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288 >seq179 Length=6459238 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| | Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| || ||||| |||||||| || ||||| ||||| || || | || |||| Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985 Query 62457 CTATTTCT 62464 || ||||| Sbjct 3619986 CTGTTTCT 3619993 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 || ||| ||||||| || ||||| || | || | || | ||||| || || || || Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 62687 || || |||||||||||||||||||||| |||||||| || ||||| | || ||| Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 || ||||| | | || ||||| || || |||| || || || |||||||| || || Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233 Query 62748 CTATGTCTCTTATTAGA 62764 | ||| | ||||| || Sbjct 3625234 CGATGACGTTTATTTGA 3625250 Score = 100 bits (110), Expect = 4e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 ||| |||| | || || |||||||| | || || ||||| || ||||||||| | ||| Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719 || || || ||||| || |||||||| | || |||||| || ||||| || || | Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCA 63749 || | ||||| |||||||||||| | |||| Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 63216 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63275 || ||||||||||||||||| || ||||| || || | ||| ||||| |||| || || Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647 Query 63276 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63335 || || || || || ||||| || ||||| || || | | ||| || | ||||| ||| Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707 Query 63336 TCCAAGTATATGGC 63349 |||||||| ||||| Sbjct 3630708 TCCAAGTAGATGGC 3630721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622932358282960