Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq103 100 3e-16 seq73 89.7 5e-13 seq4 89.7 5e-13 seq26 84.2 2e-11 seq16 84.2 2e-11 >seq103 Length=10584223 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || || |||||||| || | |||||| | ||| |||| | | Sbjct 9900140 AATGCAGATCTTTGTGAAGACCTTAACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAG 9900199 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||| ||| | ||||| |||||| ||||||||||| || ||||| || || Sbjct 9900200 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCA 9900259 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || | || | | ||| || || || ||||||| | | | | | ||||| || Sbjct 9900260 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9900319 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||| || || | || ||||||| | || ||||| || Sbjct 9900320 CATCCAGAAAGAGTCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9900367 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | |||||| | ||| |||| | | Sbjct 9900596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAGT 9900655 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| ||||| ||||||||||| || ||||| || || Sbjct 9900656 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 9900715 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 9900716 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9900775 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | ||| ||||||| | || ||||| || Sbjct 9900776 ATCCAGAAAGAGTCCACCCTGCATTTGGTCCTTCGTCTCAGAGGTGG 9900822 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | |||||| | ||| | || | | Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | |||||| |||| ||||||||||| || || ||||| || Sbjct 9901339 GACACCATTGAGAATGTCAAA----AGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9901394 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 9901395 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901454 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || |||||||| | | || ||||| Sbjct 9901455 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 9901501 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || ||||| || | |||||| | ||| | || | | Sbjct 9900824 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACC-TGGAAGTGGAGCCCAGT 9900882 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || || ||||| || Sbjct 9900883 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9900942 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 9900943 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901002 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | || ||||||| | || ||||| || Sbjct 9901003 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9901049 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | |||||| | ||| | || | | Sbjct 9901051 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901110 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || ||||| || || Sbjct 9901111 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9901170 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 9901171 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901230 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | || ||||||| | || ||||| || Sbjct 9901231 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9901277 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || || ||||| || | |||||| | ||| | || | | Sbjct 9900369 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9900428 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | ||||| |||||| ||||||||||| || ||||| || || Sbjct 9900429 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9900488 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | | ||| || || || ||||||| | | | | | ||||| ||| Sbjct 9900489 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9900548 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||| ||| || | || ||||||| | || ||||| || Sbjct 9900549 ATCCAGAAAG-ATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9900594 >seq73 Length=13007589 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || || || |||||||||||| | |||| | ||||| ||||| ||| Sbjct 8615659 GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 8615600 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | ||| | ||||| |||||||| || |||||||| | ||||| || ||| Sbjct 8615599 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTG 8615540 Query 26982 AGACTTAGAGGAGG 26995 || ||| | || || Sbjct 8615539 AGGCTTCGTGGTGG 8615526 >seq4 Length=36543856 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | ||||| ||||| || || ||||| || || || |||||| Sbjct 27117921 GATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGATCAA 27117980 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | ||||| ||||| ||||||| | ||| | ||||| ||| Sbjct 27117981 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 27118040 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTT 26987 ||||| || |||||||| ||||||| || ||||| ||| Sbjct 27118041 ATTCAGAAGGAATCTACCCTCCATCTTGTTCTGAGGCTT 27118079 >seq26 Length=21800395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || || ||||| || || || |||||||||||| | |||| | ||||| ||||| ||| Sbjct 5591801 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5591742 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | ||| | | ||||| |||||||| || || ||||| | ||||| || ||| Sbjct 5591741 GATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTG 5591682 Query 26982 AGACTTAGAGGAGG 26995 || ||| | || || Sbjct 5591681 AGGCTTCGTGGTGG 5591668 >seq16 Length=23269118 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || || || || | || || || ||||| | ||||| || || ||| Sbjct 21596468 GACAAAGAGGGCATCCCACCTTACCAGCAGAGGCTCATCCTTGCAGGCAAGCATCTGGAA 21596527 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| | | ||||| ||||| || ||||||||||| |||||||||||||| Sbjct 21596528 GATGGCAGAACCCTGCCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTGGTCCTG 21596587 Query 26982 AGACTTAGAGGAGG 26995 || ||||| || || Sbjct 21596588 AGTCTTAGGGGTGG 21596601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650995868320