Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq103 100 3e-16
seq73 89.7 5e-13
seq4 89.7 5e-13
seq26 84.2 2e-11
seq16 84.2 2e-11
>seq103
Length=10584223
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827
|||||| | ||||| || || |||||||| || | |||||| | ||| |||| | |
Sbjct 9900140 AATGCAGATCTTTGTGAAGACCTTAACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAG 9900199
Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887
|||||||| ||| | ||||| |||||| ||||||||||| || ||||| || ||
Sbjct 9900200 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCA 9900259
Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947
|| || | || | | ||| || || || ||||||| | | | | | ||||| ||
Sbjct 9900260 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9900319
Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
||| || ||||| || || | || ||||||| | || ||||| ||
Sbjct 9900320 CATCCAGAAAGAGTCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9900367
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || ||||| || | |||||| | ||| |||| | |
Sbjct 9900596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAGT 9900655
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| ||||| ||||||||||| || ||||| || ||
Sbjct 9900656 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 9900715
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | ||| || || || ||||||| | | | | | ||||| |||
Sbjct 9900716 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9900775
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || ||||| || || | ||| ||||||| | || ||||| ||
Sbjct 9900776 ATCCAGAAAGAGTCCACCCTGCATTTGGTCCTTCGTCTCAGAGGTGG 9900822
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || ||||| || | |||||| | ||| | || | |
Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | |||||| |||| ||||||||||| || || ||||| ||
Sbjct 9901339 GACACCATTGAGAATGTCAAA----AGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9901394
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | ||| || || || ||||||| | | | | | ||||| |||
Sbjct 9901395 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901454
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || |||||||| ||| | || |||||||| | | || |||||
Sbjct 9901455 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 9901501
Score = 86.0 bits (94), Expect = 6e-12
Identities = 156/227 (69%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | ||||| || || || ||||| || | |||||| | ||| | || | |
Sbjct 9900824 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACC-TGGAAGTGGAGCCCAGT 9900882
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| |||||| ||||||||||| || || ||||| ||
Sbjct 9900883 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9900942
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | ||| || || || ||||||| | | | | | ||||| |||
Sbjct 9900943 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901002
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || ||||| || || | || ||||||| | || ||||| ||
Sbjct 9901003 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9901049
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || ||||| || | |||||| | ||| | || | |
Sbjct 9901051 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901110
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| |||||| ||||||||||| || ||||| || ||
Sbjct 9901111 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9901170
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | ||| || || || ||||||| | | | | | ||||| |||
Sbjct 9901171 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901230
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || ||||| || || | || ||||||| | || ||||| ||
Sbjct 9901231 ATCCAGAAAGAGTCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9901277
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/227 (68%), Gaps = 1/227 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || || || || ||||| || | |||||| | ||| | || | |
Sbjct 9900369 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9900428
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|||||||| ||| | ||||| |||||| ||||||||||| || ||||| || ||
Sbjct 9900429 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9900488
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| || | || | | ||| || || || ||||||| | | | | | ||||| |||
Sbjct 9900489 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9900548
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995
|| || |||| ||| || | || ||||||| | || ||||| ||
Sbjct 9900549 ATCCAGAAAG-ATCCACCCTGCACTTGGTCCTTCGTCTCAGAGGTGG 9900594
>seq73
Length=13007589
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|| |||||||| || || || |||||||||||| | |||| | ||||| ||||| |||
Sbjct 8615659 GATAAAGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAA 8615600
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| | ||| | ||||| |||||||| || |||||||| | ||||| || |||
Sbjct 8615599 GATGGTCGAACTTTGTCTGACTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTG 8615540
Query 26982 AGACTTAGAGGAGG 26995
|| ||| | || ||
Sbjct 8615539 AGGCTTCGTGGTGG 8615526
>seq4
Length=36543856
Score = 89.7 bits (98), Expect = 5e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| ||||| || | ||||| ||||| || || ||||| || || || ||||||
Sbjct 27117921 GATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGATCAA 27117980
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|||||| | |||| | ||||| ||||| ||||||| | ||| | ||||| |||
Sbjct 27117981 CAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 27118040
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTT 26987
||||| || |||||||| ||||||| || ||||| |||
Sbjct 27118041 ATTCAGAAGGAATCTACCCTCCATCTTGTTCTGAGGCTT 27118079
>seq26
Length=21800395
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|| || ||||| || || || |||||||||||| | |||| | ||||| ||||| |||
Sbjct 5591801 GATAAGGAAGGTATTCCCCCTGATCAACAAAGATTGATTTTTGCAGGCAAGCAACTGGAA 5591742
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| | ||| | | ||||| |||||||| || || ||||| | ||||| || |||
Sbjct 5591741 GATGGTTGAACTTTGACTGACTACAACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTG 5591682
Query 26982 AGACTTAGAGGAGG 26995
|| ||| | || ||
Sbjct 5591681 AGGCTTCGTGGTGG 5591668
>seq16
Length=23269118
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921
|||||||| || || || || | || || || ||||| | ||||| || || |||
Sbjct 21596468 GACAAAGAGGGCATCCCACCTTACCAGCAGAGGCTCATCCTTGCAGGCAAGCATCTGGAA 21596527
Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981
|||| |||| | | ||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 21596528 GATGGCAGAACCCTGCCTGACTACAACATCCAGAAAGAATCTACCCTCCATCTGGTCCTG 21596587
Query 26982 AGACTTAGAGGAGG 26995
|| ||||| || ||
Sbjct 21596588 AGTCTTAGGGGTGG 21596601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478650995868320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |