Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq36 179 1e-39 >seq36 Length=18184789 Score = 179 bits (198), Expect = 1e-39 Identities = 410/613 (67%), Gaps = 8/613 (1%) Strand=Plus/Minus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| | || ||||| ||||| | |||||||| | | || || || |||||| Sbjct 7686510 TTTCCTTTGCTGACAACCAAGCGTGTGTTCTGGAAGGGTGTGCTGGAGGAGCTGCTGTGG 7686451 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 |||||| || |||||||| || || || | || ||| |||||||| ||||| Sbjct 7686450 TTTATTAAGGGTTCCACAAATGCTAAGGAGCTCTCTGCCAAAGGAGTAAAAATCTGGGAC 7686391 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA-CAACGAAGAAGGTGA 111493 | |||||||| || |||||| | || || || || | | || || ||||| || Sbjct 7686390 GCCAATGGATCTCGAGACTTTTTGGA-CAAGCAGGGGTTCACTACCAGAGAGGAAGGAGA 7686332 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 | | |||||||| || || || || ||| | || ||||| ||||| |||||| ||| Sbjct 7686331 TTTGGGACCAGTGTATGGCTTCCAGTGGAGACATTTTGGGGCAGAATACAAAGAGATG-- 7686274 Query 111554 CGACTCATATGATTC---ACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAA 111610 | || || |||| ||| ||| |||||| |||| || |||||||| ||| || Sbjct 7686273 -AATACAGATTATTCTGGACAAGGAGTGGATCAACTACAAAAAGTCATTGACACAATCAA 7686215 Query 111611 GAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 | ||| || | | | || |||||| |||| ||||| || || | | Sbjct 7686214 AACCAATCCTCATGACAGAAGGATCATTATGTGTGCTTGGAATCCTAAAGATCTTCCTCT 7686155 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTTC 111730 |||||| | || ||||| || | | || ||||| |||||| | || |||||| Sbjct 7686154 GATGGCATTACCTCCATGCCACGCTCTCTGTCAGTTCTATGTATTGAATGGTGAGCTTTC 7686095 Query 111731 ATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAG 111790 || || | || |||||||||| ||||| || ||||| || ||||| || ||||| || Sbjct 7686094 TTGTCAGCTATACCAGCGATCTGGAGATATGGGCCTTGGGGTGCCGTTCAACATTGCCAG 7686035 Query 111791 TTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCAT 111850 |||| | || || || | | | || |||||| | ||| || || || ||||| || | Sbjct 7686034 TTACTCCCTGCTAACCTACATGATTGCTCATGTCACAGGCCTGAAGCCAGGTGATTTTGT 7685975 Query 111851 TCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAGTT 111910 ||| | | |||||||| ||| | ||| || || |||| |||| |||| ||| | Sbjct 7685974 ACACACTCTGGGAGATGCTCATATATACTTGAATCATATTGGGCCACTGAAAATTCAGCT 7685915 Query 111911 GAAGCGCAAACCA 111923 |||| ||||| Sbjct 7685914 TCAGCGAGAACCA 7685902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303321771290492