Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq103 105 6e-18
>seq103
Length=10584223
Score = 105 bits (116), Expect = 6e-18
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | ||||| || || |||||||| || | || ||| | ||||| ||| |||
Sbjct 9900140 AATGCAGATCTTTGTGAAGACCTTAACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAG 9900199
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||||| ||| | ||||| |||||| |||||||||||||| ||||| || ||
Sbjct 9900200 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCA 9900259
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||||| |||| | | ||| ||||| || |||||||
Sbjct 9900260 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9900297
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || ||||| || | || ||| | ||||| ||| |||
Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | |||||| |||| |||||||||||||| || ||||| ||
Sbjct 9901339 GACACCATTGAGAATGTCAAA----AGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9901394
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | ||| ||||| || ||||||| | | | | || || |||
Sbjct 9901395 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901454
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
|| || |||||||| || | || || || | | ||||| |||||
Sbjct 9901455 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 9901501
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || ||||| || | || ||| | ||||| ||| |||
Sbjct 9900369 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9900428
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | ||||| |||||| |||||||||||||| ||||| || ||
Sbjct 9900429 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9900488
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||||| |||| | | ||| ||||| || |||||||
Sbjct 9900489 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9900525
Score = 95.1 bits (104), Expect = 1e-14
Identities = 116/157 (74%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || || ||||| || | || ||| | ||||| ||| |||
Sbjct 9900824 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACC-TGGAAGTGGAGCCCAGT 9900882
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | ||||| |||||| |||||||||||||| || ||||| ||
Sbjct 9900883 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9900942
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||||| |||| | | ||| ||||| || |||||||
Sbjct 9900943 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9900979
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || ||||| || | || ||| | ||||| ||| |||
Sbjct 9901051 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901110
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | ||||| |||||| |||||||||||||| ||||| || ||
Sbjct 9901111 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9901170
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||||| |||| | | ||| ||||| || |||||||
Sbjct 9901171 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9901207
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || || || || ||||| || | || ||| | ||||| ||| |||
Sbjct 9900596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAGT 9900655
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | ||||| ||||| |||||||||||||| ||||| || ||
Sbjct 9900656 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 9900715
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | | ||| ||||| || ||||||| | | | | || || |||
Sbjct 9900716 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9900775
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| || ||||| || || | ||||| ||
Sbjct 9900776 ATCCAGAAAGAGTCCACCCTGCATTTGGT 9900804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429926012855430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |