Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq103 105 6e-18 >seq103 Length=10584223 Score = 105 bits (116), Expect = 6e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || |||||||| || | || ||| | ||||| ||| ||| Sbjct 9900140 AATGCAGATCTTTGTGAAGACCTTAACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAG 9900199 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| ||| | ||||| |||||| |||||||||||||| ||||| || || Sbjct 9900200 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCA 9900259 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||| ||||| || ||||||| Sbjct 9900260 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9900297 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || ||| | ||||| ||| ||| Sbjct 9901279 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901338 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | |||||| |||| |||||||||||||| || ||||| || Sbjct 9901339 GACACCATTGAGAATGTCAAA----AGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9901394 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 9901395 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9901454 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || |||||||| || | || || || | | ||||| ||||| Sbjct 9901455 ATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 9901501 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || ||| | ||||| ||| ||| Sbjct 9900369 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9900428 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| ||||| || || Sbjct 9900429 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9900488 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||| ||||| || ||||||| Sbjct 9900489 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9900525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/157 (74%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || ||||| || | || ||| | ||||| ||| ||| Sbjct 9900824 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACC-TGGAAGTGGAGCCCAGT 9900882 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| || ||||| || Sbjct 9900883 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCCCCCGACCAG 9900942 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||| ||||| || ||||||| Sbjct 9900943 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9900979 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || ||| | ||||| ||| ||| Sbjct 9901051 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 9901110 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| |||||| |||||||||||||| ||||| || || Sbjct 9901111 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCAGACCAG 9901170 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| |||| | | ||| ||||| || ||||||| Sbjct 9901171 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATG 9901207 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || ||||| || | || ||| | ||||| ||| ||| Sbjct 9900596 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTAGAGCCCAGT 9900655 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | ||||| ||||| |||||||||||||| ||||| || || Sbjct 9900656 GACACCATTGAGAATGTCAAGGCGAAGATCCAAGACAAAGAAGGCATTCCTCCAGACCAG 9900715 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 9900716 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAAC 9900775 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || ||||| || || | ||||| || Sbjct 9900776 ATCCAGAAAGAGTCCACCCTGCATTTGGT 9900804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429926012855430