Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq65 107 1e-18
seq131 96.9 2e-15
seq103 95.1 8e-15
seq332 84.2 1e-11
>seq65
Length=13810318
Score = 107 bits (118), Expect = 1e-18
Identities = 158/224 (71%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 38094 CCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAA 38153
|||| | |||| |||||| || |||||| ||| || || || ||||| || || ||
Sbjct 5575219 CCTCGAAGACGCGGCACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAGGAA 5575278
Query 38154 ACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACG 38213
|| | || |||| |||||||| ||||| || | ||||||||||| | ||||
Sbjct 5575279 GTTCGGCCATCTTCTAGCTGTTTTCCAGCAAAAATCGGACGTTGTTGATCTGGTGGGATA 5575338
Query 38214 CCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCT 38273
||||| |||||| ||||| || ||||||| || |||||| | |||||| ||
Sbjct 5575339 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCA 5575398
Query 38274 AATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || | ||||| ||| ||||| || ||| ||||
Sbjct 5575399 AGAGTGATGGTCTTGCTCGTCAGGGTCTTCACAAAGATCCGCAT 5575442
>seq131
Length=8971046
Score = 96.9 bits (106), Expect = 2e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 5979620 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 5979561
Query 20007 GGTAATATTTAGCCTTAT 20024
| | | ||| ||||||
Sbjct 5979560 GCTGGAAATTAACCTTAT 5979543
>seq103
Length=10584223
Score = 95.1 bits (104), Expect = 8e-15
Identities = 158/228 (69%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
||| || ||||| |||| ||||| || |||||| || || || || ||||| |||||
Sbjct 9901502 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGA 9901443
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|| || | || || | || || |||||||| || | | || || |||| |||
Sbjct 9901442 CAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGG 9901383
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
|| |||||||||||| || ||||| ||||||| | || || | || ||
Sbjct 9901382 GATGCCTTCTTTGTCTTGGATCTTTTG----ACATTCTCAATGGTGTCACTGGGCTCCAC 9901327
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| | || || || || || |||||||| |||||||| ||||||||
Sbjct 9901326 TTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901279
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/227 (69%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | ||||| || || ||| ||| || || || ||||| ||||||
Sbjct 9901049 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900990
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || |||||||| || | | || || |||| ||||
Sbjct 9900989 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCGGGGGGG 9900930
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| || ||| ||| ||||||| | || || | || |||
Sbjct 9900929 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900870
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||||||| ||||| || ||||||||
Sbjct 9900869 TC-CAGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 9900824
Score = 89.7 bits (98), Expect = 3e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | ||||| || || ||| ||| || || || ||||| ||||||
Sbjct 9901277 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9901218
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || |||||||| || | | || || || | |||
Sbjct 9901217 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9901158
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| || ||| ||| ||||||| | || || | || |||
Sbjct 9901157 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9901098
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||||||| |||||||| ||||||||
Sbjct 9901097 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9901051
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | |||||||| || ||| ||| || || || ||||| ||||||
Sbjct 9900822 CCACCTCTGAGACGAAGGACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 9900763
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || |||||||| || | | || || || | ||
Sbjct 9900762 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGA 9900703
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| || || ||| ||||||| | || || | || |||
Sbjct 9900702 ATGCCTTCTTTGTCTTGGATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 9900643
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||||||| |||||||| ||||||||
Sbjct 9900642 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/227 (68%), Gaps = 1/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|||||||| | ||| | ||||| || || ||| || || || || ||||| ||||||
Sbjct 9900594 CCACCTCTGAGACGAAGGACCAAGTGCAGGGTGGA-TCTTTCTGGATGTTGTAGTCAGAC 9900536
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || |||||||| || | | || || || | |||
Sbjct 9900535 AGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGG 9900476
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| || ||| ||| ||||||| | || || | || |||
Sbjct 9900475 ATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACT 9900416
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||||||| |||||||| ||||||||
Sbjct 9900415 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 9900369
>seq332
Length=1927111
Score = 84.2 bits (92), Expect = 1e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
|||||| || ||| || ||||||||||| ||||||||| | || | || || | ||
Sbjct 1859725 ATGAAGGGTAGACTCTTTCTGAATATTGTAGTCAGACAAAGTATGTCCATCTTCCAGCTG 1859784
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
|| || ||||| || | ||||||||| ||||| | |||||| || | || ||
Sbjct 1859785 CTTGCCTGCAAAAATCCATCTTTGTTGATCAGAGGGAATGCCTTCCTTATTTTGTATCTT 1859844
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| ||||| | | |||||| |||||| || | || || || || ||| |
Sbjct 1859845 GGTCTTGACATTTTCAATAGTATCGGATGGTTCAACCTCAAGAGTGATGGTCTTCCCCAT 1859904
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
||| || |||| ||| ||||||||
Sbjct 1859905 CAAAGTCTTCATGAAAATCTGCAT 1859928
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334939419385886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |