Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq71 156 5e-33
seq179 118 1e-21
seq48 114 2e-20
seq8 91.5 2e-13
>seq71
Length=13082442
Score = 156 bits (172), Expect = 5e-33
Identities = 330/478 (69%), Gaps = 22/478 (5%)
Strand=Plus/Minus
Query 32640 AATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 32699
|||| ||||| ||||| | || | ||| | |||| || || ||| ||| |||||||
Sbjct 3040086 AATAGTTGTTTGAACATTGAGCAGGTGAAGCCACAGTATAAACTCTCATCTTTACTAATA 3040027
Query 32700 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 32759
| ||| |||||||| | | || |||||| || || || ||||| ||||| ||
Sbjct 3040026 AGTTCATTGGAAAAAGCTAAGCCAAGCATTAAACCT---TTCTTGAGCCAGAATATCGAT 3039970
Query 32760 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA 32819
| || || ||||||||| ||||||| || || |||||||| | | | || |||
Sbjct 3039969 GTGAAAGAATCAGAAAAGA---TTCCTTCAACAGCTGCAAAGGCTACCACACATTCACCA 3039913
Query 32820 TAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG-GCCTTCTTTTTTACACAAGG 32878
|| | ||| ||| |||| | ||| || || || |||||||| ||||||||
Sbjct 3039912 TAT--GTTGCTTCTTTGTCTCCAATCC--AGCACAGTCCAGCTTTCTTTTTAACACAAGG 3039857
Query 32879 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 32938
| ||| || || |||| |||||| | || |||| || ||||||| ||| || ||
Sbjct 3039856 TAGTGTTTCAATGCCATTGAAGAGAAA-TTCCTTTCTTTTGAGTCTTTAATATAAGTGTC 3039798
Query 32939 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998
||| | |||||| |||||| ||||| ||||||| ||| ||||| || || |||||
Sbjct 3039797 AATAAGGAGACTA--CATTTCAGAATG--TGTTTTCCGTGGTAATTTGGAAGCCATAGAA 3039742
Query 32999 GCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33058
|| | || | ||| ||||||| || | | | | | | | || ||| |||| ||
Sbjct 3039741 ACAGCAGGCTTAGGTTATCTGTATTTGTTGGCTCACT-GCAGTACCAAGTTTGCATTTAC 3039683
Query 33059 TATTCCGTCACTG-GCTGCAAAAAACGCCAATACATG--TTTTATA-AAATATTTTTC 33112
| | || || ||| |||||||| || ||||||||||| | |||| |||||| ||||
Sbjct 3039682 TCTGCCATC-CTGTGCTGCAAAGAAAGCCAATACATGCAATGTATATAAATATATTTC 3039626
>seq179
Length=6459238
Score = 118 bits (130), Expect = 1e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| |||| ||||| ||||| ||||| || ||||| || ||||| |
Sbjct 3619866 ACCTGAAATTCTCCCGACAGGACTCTTCGAGTATAAATGTTGCTGGTGTAAGGTTCAATG 3619925
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
||||||||||| || ||||| |||||||| || ||||| ||||| || || | || ||||
Sbjct 3619926 GACTCATTATTCCCTAAAATCTGAGCAGTAGAGGCAGTTGGCATTGGGGCAAGCAGTAAA 3619985
Query 62312 CTATTTCT 62319
|| |||||
Sbjct 3619986 CTGTTTCT 3619993
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482
|| ||| ||||||| || ||||| || | || | || | ||||| || || || ||
Sbjct 3625054 GAGCCTTCATATGTTTCATATGGGCCATACTCGTTGGCCAAATCACAGCTGGCTTCCAAG 3625113
Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCA 62542
|| || |||||||||||||||||||||| |||||||| || ||||| | || |||
Sbjct 3625114 GCTCCATAATAAATGGTTTCGAAGATCTGTTTATTTAGTAACTGGGCTTCTGGACTCTCA 3625173
Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602
|| ||||| | | || ||||| || || |||| || || || |||||||| || ||
Sbjct 3625174 AAAGGATATCTCATCAGGATAAAAGCATCAGCTAGACCCTGCACTCCAATACCAATGGGG 3625233
Query 62603 CTATGTCTCTTATTAGA 62619
| ||| | ||||| ||
Sbjct 3625234 CGATGACGTTTATTTGA 3625250
Score = 104 bits (114), Expect = 3e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514
||| |||| | || || |||||||| | || || ||||| |||||||||||| | |||
Sbjct 3636228 TGGGGACGGTTGGTGCCTGCATTAAAGAGAGTGGGGGAAGCATGAGTAAACCATCTCTCA 3636287
Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574
|| || || ||||| || |||||||| | || |||||| || ||||| || || |
Sbjct 3636288 GACAGAAGGTTGTAGGTTTCAATAGCAGCATCAATATCCTCTTCGTGAATCCCCACAGAC 3636347
Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCA 63604
|| | ||||| |||||||||||| | ||||
Sbjct 3636348 ACTCTCATTAGCATGTGCTGAGGACGTTCA 3636377
Score = 102 bits (112), Expect = 1e-16
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
|||| || | ||| ||||||||||| || | ||| || || || || || || |||| |
Sbjct 3640125 CACTGAACACTTTCTTTGTTTCTTTATGCAAATTAGAAACAGCAATCCTGGCTGCTAAGA 3640184
Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929
||||||| || || || | || || | || || || |||| || |||| ||||| |
Sbjct 3640185 TGGCATAGTCAGGGTGCTTGGTGGTCAAGGTTGCAGCCGTTTCAGCAGCCAAGGTGTCTA 3640244
Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTT 63983
|||| || || || || ||| | |||| |||||||||||| ||||| | ||||
Sbjct 3640245 ATTCCACTGTGGTCACTCCACTGTATAATCCTTGGATAACTTTCATGGTGATTT 3640298
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130
|| ||||||||||||||||| || ||||| || || | ||| ||||| |||| || ||
Sbjct 3630588 ACCCGTTTCATAAAGAGATCTGGGATCCAGAGGGCAAAAAAAAGATCCCTGGCTCGCTGC 3630647
Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190
|| || || || || ||||| || ||||| || || | | ||| || | ||||| |||
Sbjct 3630648 TCTTCCTTCCCAGTGTTCTTCTTCAGATCAAGAAATTCAAAAATGTCTAAGTGCCATGGT 3630707
Query 63191 TCCAAGTATATGGC 63204
|||||||| |||||
Sbjct 3630708 TCCAAGTAGATGGC 3630721
>seq48
Length=16487017
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||||||||| | ||| |||||||| || | ||| ||||||| || || || |
Sbjct 7775840 CCTCATCTCTACTAATAAGTTCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCT 7775781
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| |||||||| ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 7775780 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAG 7775721
Query 32803 C 32803
|
Sbjct 7775720 C 7775720
Score = 100 bits (110), Expect = 4e-16
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981
|| |||| ||| || ||||| | |||||||||||||| ||||| |||||||| || ||
Sbjct 7772392 TCCTTAATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCA 7772333
Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026
|||||||| || ||||| || | ||| || || ||||||||||||
Sbjct 7772332 ATTTGAAAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCT 7772288
>seq8
Length=27308231
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218
|| ||||| | ||||| || ||||||| |||| ||| ||||| |||||||||||| ||
Sbjct 9743409 ACCTCTTCAGCGGTCCAGAAGGATGCCTGGGCCTGTTTGTACATTTTCCAGATGTCAGGA 9743468
Query 33219 TATTGAATTGGAAAAATAACAAATC 33243
|| |||||||||||||| |||||||
Sbjct 9743469 TACTGAATTGGAAAAATGACAAATC 9743493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633616903717600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |