Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq71 113 5e-20
seq48 98.7 1e-15
>seq71
Length=13082442
Score = 113 bits (124), Expect = 5e-20
Identities = 262/387 (68%), Gaps = 20/387 (5%)
Strand=Plus/Minus
Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228
|||||||||||| ||||| || | ||| | ||||||| | | ||||| || |||||
Sbjct 3039991 TTTCTTGAGCCAGAATATCGATGTGAAAGAATCAGAAAAGATT---CCTTCAACAGCTGC 3039935
Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288
||| || || | || ||| || | |||| || | ||||| | || |||
Sbjct 3039934 AAAGGCTACCACACATTCACCATATGTTGCTTCTTTGTCTCCAATCCAGC--ACAGTCCA 3039877
Query 93289 ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC 93348
||||| || |||| ||||||||||||||| || | || || | | ||| | ||
Sbjct 3039876 ----GCTTTCTTTTTAACACAAGGTAGTGTTTCAATGCCATTGAAGA-GAAATTCCTTTC 3039822
Query 93349 GTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTC 93408
| || ||| || || || || || | |||| |||||||||||||| || ||
Sbjct 3039821 TTTTGAGTCTTTAATATAAGTGTCAAT--AAGGAGACTACATTTCAGAATG--TGTTTTC 3039766
Query 93409 CATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468
| | | ||||||||| || |||||||| | |||| || ||||| | || ||| | |
Sbjct 3039765 CGTGGTAATTTGGAAGCCATAGAAACAGCAGGCTTAGGTTATCTGTATTTGTTG-GCTCA 3039707
Query 93469 TCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528
| ||| | ||| |||| ||| | ||||| ||||||||| |||||||||| |||
Sbjct 3039706 CTGCAGTACCAAGTTTGCATTTACTCTGCCATCCTGTGCTGCAAAGAAAGCCAATACATG 3039647
Query 93529 C----TTTATAAA-ATGTTTCTCATCA 93550
| | |||||| || |||| | |||
Sbjct 3039646 CAATGTATATAAATATATTTCCCCTCA 3039620
>seq48
Length=16487017
Score = 98.7 bits (108), Expect = 1e-15
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| || ||||| || || | | ||||||||||||||||| ||||| || |||
Sbjct 7775820 TCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCA 7775761
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG 93247
||| ||||||||| || || ||||| || |||||||| || |||| |||||||
Sbjct 7775760 AAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCTACAACACGTTCG 7775707
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|| || || || || | ||| ||||||||||||||| | || ||||| ||||||||
Sbjct 7772386 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGA 7772327
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
|| || |||||||| | ||||||||| ||||| ||||||||
Sbjct 7772326 AAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCTTG 7772286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556847532791440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |