Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq71 113 5e-20 seq48 98.7 1e-15 >seq71 Length=13082442 Score = 113 bits (124), Expect = 5e-20 Identities = 262/387 (68%), Gaps = 20/387 (5%) Strand=Plus/Minus Query 93169 TTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGC 93228 |||||||||||| ||||| || | ||| | ||||||| | | ||||| || ||||| Sbjct 3039991 TTTCTTGAGCCAGAATATCGATGTGAAAGAATCAGAAAAGATT---CCTTCAACAGCTGC 3039935 Query 93229 AAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCA 93288 ||| || || | || ||| || | |||| || | ||||| | || ||| Sbjct 3039934 AAAGGCTACCACACATTCACCATATGTTGCTTCTTTGTCTCCAATCCAGC--ACAGTCCA 3039877 Query 93289 ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTC 93348 ||||| || |||| ||||||||||||||| || | || || | | ||| | || Sbjct 3039876 ----GCTTTCTTTTTAACACAAGGTAGTGTTTCAATGCCATTGAAGA-GAAATTCCTTTC 3039822 Query 93349 GTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTC 93408 | || ||| || || || || || | |||| |||||||||||||| || || Sbjct 3039821 TTTTGAGTCTTTAATATAAGTGTCAAT--AAGGAGACTACATTTCAGAATG--TGTTTTC 3039766 Query 93409 CATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAA 93468 | | | ||||||||| || |||||||| | |||| || ||||| | || ||| | | Sbjct 3039765 CGTGGTAATTTGGAAGCCATAGAAACAGCAGGCTTAGGTTATCTGTATTTGTTG-GCTCA 3039707 Query 93469 TCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATG 93528 | ||| | ||| |||| ||| | ||||| ||||||||| |||||||||| ||| Sbjct 3039706 CTGCAGTACCAAGTTTGCATTTACTCTGCCATCCTGTGCTGCAAAGAAAGCCAATACATG 3039647 Query 93529 C----TTTATAAA-ATGTTTCTCATCA 93550 | | |||||| || |||| | ||| Sbjct 3039646 CAATGTATATAAATATATTTCCCCTCA 3039620 >seq48 Length=16487017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| || ||||| || || | | ||||||||||||||||| ||||| || ||| Sbjct 7775820 TCATTGGAAAAAGTTAATCCAGGCATTAAACCTCGTTTCTTGAGCCAGAATATGGATGCA 7775761 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG 93247 ||| ||||||||| || || ||||| || |||||||| || |||| ||||||| Sbjct 7775760 AAAGAACCAGAAAAGAAGATTCCTTCAACAGCTGCAAAAGCTACAACACGTTCG 7775707 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | ||| ||||||||||||||| | || ||||| |||||||| Sbjct 7772386 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATAGCAATTTGA 7772327 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 || || |||||||| | ||||||||| ||||| |||||||| Sbjct 7772326 AAGCCATAGAAACAGCGAGCTTCCGTTATCTGTACTTCTTG 7772286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556847532791440