Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq65 134 1e-26 seq103 111 1e-19 seq94 100 2e-16 seq93 98.7 8e-16 seq4 98.7 8e-16 seq37 93.3 4e-14 seq165 91.5 1e-13 seq46 91.5 1e-13 seq159 89.7 4e-13 seq73 87.8 2e-12 seq48 87.8 2e-12 seq140 84.2 2e-11 seq75 84.2 2e-11 seq26 84.2 2e-11 seq134 82.4 6e-11 >seq65 Length=13810318 Score = 134 bits (148), Expect = 1e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||| || ||||| || || | || | || || |||||||||| || ||| ||| Sbjct 5575444 AGATGCGGATCTTTGTGAAGACCCTGACGAGCAAGACCATCACTCTTGAGGTTGAACCCA 5575385 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||||| | || || ||||| ||||| || |||||||| ||||| ||||| |||| Sbjct 5575384 GTGATACTATCGAGAATGTCAAAGCCAAAATCCAGGACAAGGAAGGTATCCCACCAGATC 5575325 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||||||||| || ||||| || |||||| |||| ||| ||| || |||||| |||| Sbjct 5575324 AACAACGTCCGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGAACTTCCTCCGACTACA 5575265 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || ||||| ||||| Sbjct 5575264 ACATCCAGAAAGAGTCCAC 5575246 >seq103 Length=10584223 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || || || || || || |||| || |||||||| ||| Sbjct 9901278 GATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAG 9901337 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || ||||| | || |||||||| || || || || ||||| || Sbjct 9901338 TGACACCATTGAGAATGTCAAA----AGATCCAAGACAAAGAAGGCATCCCCCCCGACCA 9901393 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || |||||||| || ||| | || ||| |||||| | || || ||||| Sbjct 9901394 GCAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGATGGTCGCACCCTGTCTGACTACAA 9901453 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||||||||| | || || || |||| ||| | |||||| Sbjct 9901454 CATCCAGAAAGAATCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGGT 9901502 >seq94 Length=10919598 Score = 100 bits (110), Expect = 2e-16 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 ||| | |||||| |||||||| | ||||| | || || || |||| ||||| || || Sbjct 5504687 TGTCACGATGCAGATTTTTGTGAGGACTTTGATGGGGAAGACCATCACACTTGAGGTCGA 5504746 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | || | ||||| | || || |||| || || ||||| |||| |||||||| | Sbjct 5504747 ACCCTCTGATACTATTGAAAATGTCAAGGCCAAGATACAAGATCAGGAAGGTATTCCCTC 5504806 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||||||| | | || ||||| ||||| || | || ||| || || | || || Sbjct 5504807 TGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGA 5504866 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||||||||| || || || ||| | ||| | ||| || Sbjct 5504867 CTACAACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTG 5504906 >seq93 Length=11044861 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||||| || || | || |||| ||||| || ||| | | Sbjct 4041489 GATGCAGATTTTTGTGAAGACTTTGACAGGGGAGACTATCACGCTTGAGGTCGAACCGTC 4041548 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || |||| || || ||||| ||||| |||||||| || ||||| Sbjct 4041549 TGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCA 4041608 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | || |||| ||||| || | || ||| || | | || || ||||| Sbjct 4041609 ACAAAAATTGATTTTTGTGGGCAAGCAACTGGAAGATGGTCGAATTTTGTCTGACTACAA 4041668 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||| || ||||| ||| | ||| | ||| || Sbjct 4041669 CATTCAGAAGGAATCTACCCTTCATCTTGTTCTG 4041702 >seq4 Length=36543856 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || ||||| || | || || || ||||| || ||| | | Sbjct 27117860 GATGCAGATTTTCGTGAAGACTTTCACAGAGAAGACCACCATGCTTGAGGTTGAACCATC 27117919 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || |||| || || ||||| ||||| || ||||| || ||||| Sbjct 27117920 TGATACCATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGAATTCCCCCTGATCA 27117979 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || ||||| ||||| || | || ||| || || | || || ||||| Sbjct 27117980 ACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAA 27118039 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||| || ||||| ||| | ||| | ||| || Sbjct 27118040 CATTCAGAAGGAATCTACCCTCCATCTTGTTCTG 27118073 >seq37 Length=18181243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| | || ||||| || || || || | || ||||| || ||| | Sbjct 5582605 GATGCAGATTTTCATGAAGACTTTGACAGGGAAGACCATTACGCTTGAGGTCGAACTGTC 5582664 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || |||| || || ||||| ||||| |||||||| || ||||| Sbjct 5582665 TGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCA 5582724 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || ||||| ||||| || | || ||| || || | || || ||||| Sbjct 5582725 ACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAA 5582784 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||| || || || ||| | ||| | ||| Sbjct 5582785 CATTCAGAAGGAGTCTACCCTTCATCTTGTT 5582815 >seq165 Length=7268927 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| | || || || ||| ||||| || |||||| | Sbjct 1007436 ATGCAGATTTTTGTGAAGACTTTGATGGGGAAGACCATCATCCTTGAGGTC-AAACCATC 1007494 Query 22279 -GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || |||| || | ||||| ||||| |||||||| || ||||| Sbjct 1007495 AGATACTATTGAAAATGTCAAGGCCAAGACACAAGATAAGGAAGGTATTCCCCCTGATCA 1007554 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || ||||| | ||| || | || ||| | || | || || ||||| Sbjct 1007555 ACAAGGATTGATTTTTGCGGACAAGCAACTGGAAGATGGTCAAACTTTGTCTGACTACAA 1007614 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||| ||||| || ||| | ||| | ||| || Sbjct 1007615 CATTCAGAAAGAGTCTACCCTTCATCTTGTTCTG 1007648 >seq46 Length=16939101 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| ||||| || || |||||||||| || ||| | | Sbjct 5708280 ATGCAGATTTTCGTGAAGACTTTGACCGGGAAGACCATCACTCTTGAGGTCGAACCATCT 5708339 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || || || |||| || | ||||| ||||| |||| ||| || |||||| Sbjct 5708340 GACACTACTGAAAATGTCAAGGCCAAGGTACAAGATAAGGATGGTACTCCCCCTGATCAA 5708399 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| ||||| || | || ||| || || | || || |||||| Sbjct 5708400 CAAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAAC 5708459 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||| || || || || | ||| | ||| || Sbjct 5708460 ATTCAGAAGGAGTCTACACTTCATCTTGTTCTG 5708492 >seq159 Length=7530659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || |||| || || || || ||| ||||| || ||| | | Sbjct 4974565 GATGCAGATTTTCGTGAAGACTTGGACGGGGAAGACCATCATGCTTGAGGTCGAACCGTC 4974624 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || |||| || || ||| | ||||| |||||||| || |||| Sbjct 4974625 TGATACTATTGAAAATGTCAAGGCCAAGATACAAAATAAGGAAGGTATTCCCCCTCATCA 4974684 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || |||||| |||| || | || ||| || || | || || ||||| Sbjct 4974685 ACAAAGATTGATTTTTGCCAGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGACTACAA 4974744 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||| || || || ||| | ||| | ||| || Sbjct 4974745 CATTCAGAAGGAGTCTACCCTTCATCTTGTTCTG 4974778 >seq73 Length=13007589 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/220 (69%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA-----A 22272 |||||| ||||| || || ||||| | || || || |||| ||||| | || | Sbjct 8615759 GATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACGCTTGAGCTTGAGGTCGA 8615700 Query 22273 ACCACC-GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 |||| | ||||| | | || |||| || || ||||| || || |||||||| || Sbjct 8615699 ACCATCTGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCC 8615640 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 ||||||||| | | || ||||| ||||| || | || ||| || || | || || Sbjct 8615639 TGATCAACAAAGATTGATTTTTGCGGGCAAGCAACTGGAAGATGGTCGAACTTTGTCTGA 8615580 Query 22392 TTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||||||||| || ||||| ||| | ||| | ||| || Sbjct 8615579 CTACAACATTCAGAAGGAATCTACCCTTCATCTTGTTCTG 8615540 >seq48 Length=16487017 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || ||||| | || || || |||| ||||| || |||||| Sbjct 8366675 GATGCAGATTTTCGTGAAGACTTTGATGGGGAAGACCATCACCCTTGAGGTC-AAACCAT 8366733 Query 22278 C-GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | || || |||| || || ||||| ||||| |||||||| || |||| Sbjct 8366734 CTGATACTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATC 8366793 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 ||||| | | || |||| ||||| || | || | | | || | || || |||| Sbjct 8366794 AACAAAGATTGATTTTTGTGGGCAAGCAACTGGAAGGTGGTCAAACTTTGTCTGACTACA 8366853 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 ||||||| || || || ||| | ||| | ||| || Sbjct 8366854 ACATTCAGAAGGAGTCTACCCTTCATCTTGTTCTG 8366888 >seq140 Length=8386802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| | || ||||| | || || || |||| ||||| || ||| | | Sbjct 635478 GATGCAGATTTTCATGAAGACTTTGATGGGGAAGACCATCACGCTTGAGGTCGAACCGTC 635419 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | | || |||| || || ||||| ||||| |||||||| || ||||| Sbjct 635418 TGATACTATTGCAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCA 635359 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || |||| ||||| || | || || | || | || || ||||| Sbjct 635358 ACAAAGATTGATTTTTGTGGGCAAGCAACTGGAAAATGGTTGAACTTTGTCTGACTACAA 635299 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||| || ||||| ||| | ||| | ||| || Sbjct 635298 CATTCAGAAGGAATCTACCCTTCATCTTGTTCTG 635265 >seq75 Length=12821919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| | ||||| || || || || ||| ||||| || ||| | | Sbjct 2199967 GATGCAGATTTTTGTGGAGACTTTGACAGGGAAGACCATCATGCTTGAGGTTGAACCGTC 2199908 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| | || || |||| || || ||||| ||||| |||||||| || ||||| Sbjct 2199907 TAATATTATTGAAAATGTCAAGGCCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCA 2199848 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || ||||| | || || | || |||| || || | || || ||||| Sbjct 2199847 ACAAAGATTGATTTTTGCGAGTAAGCAACTGGAAGATCGTCGAACTTTGTCTGACTACAA 2199788 Query 22398 CATTCAAAAAGAATCCACC 22416 |||||| || || || ||| Sbjct 2199787 CATTCAGAAGGAGTCTACC 2199769 >seq26 Length=21800395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| | || ||||| || || || || ||| ||||| || ||| | Sbjct 5591895 GATGCAGATTTTCTTGAAGACTTTGACGGGGAAGACCATCATGCTTGAGGTAGAACAGTC 5591836 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || |||| || || ||||| ||||| |||||||| || ||||| Sbjct 5591835 TGATACTATTGAAAATGTCAAGGTCAAGATACAAGATAAGGAAGGTATTCCCCCTGATCA 5591776 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | | || ||||| ||||| || | || ||| | || | | || ||||| Sbjct 5591775 ACAAAGATTGATTTTTGCAGGCAAGCAACTGGAAGATGGTTGAACTTTGACTGACTACAA 5591716 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 |||||| || || || ||| | ||| | ||| || Sbjct 5591715 CATTCAGAAGGAGTCTACCCTTCATCTTGTTCTG 5591682 >seq134 Length=8699209 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| |||||||||||||| || ||||| || |||||| |||| ||| ||| Sbjct 5518426 GGTATCCCACCAGATCAACAACGTCTGATTTTTGCTGGAAAACAGCTAGAAGATGGCCGA 5518367 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || ||||||| ||||| || || |||| Sbjct 5518366 ACTCTCTCCGACTACAATATCCAGAAAG 5518339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419718249980890