Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq103 98.7 8e-16
seq73 82.4 6e-11
>seq103
Length=10584223
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| ||||| | || || ||||| || |||||||| || || || ||| ||||||
Sbjct 9900804 ACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900745
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
|| || || || || |||| | | ||| ||||| ||||||||||||||||||||
Sbjct 9900744 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 9900685
Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353
||||| || | | |||| |||||| ||| || || |||| ||| | || |||
Sbjct 9900684 ATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTG 9900625
Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || || || || ||||||||
Sbjct 9900624 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || |||||||| || || || ||| |||||| || || || ||
Sbjct 9900337 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9900278
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| ||||| ||||| |||||||||||||| |||||| ||
Sbjct 9900277 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9900218
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || |||| ||| | || ||||| || | ||
Sbjct 9900217 ACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTGCCAGTTAAGGTC 9900158
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 9900157 TTCACAAAGATCTGCAT 9900141
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || |||||||| || || || ||| |||||| || || || ||
Sbjct 9901247 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9901188
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| ||||| ||||| |||||||||||||| |||||| ||
Sbjct 9901187 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9901128
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || |||| ||| | || ||||| |||| ||
Sbjct 9901127 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9901068
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 9901067 TTCACGAAGATCTGCAT 9901051
Score = 93.3 bits (102), Expect = 4e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251
||||| || |||||||| || || || ||| |||||| || || || || || ||
Sbjct 9900559 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAG 9900500
Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311
|| | | ||| ||||| ||||| |||||||||||||| |||||| || | |
Sbjct 9900499 ATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTC 9900440
Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371
|||| |||||| ||| || || |||| ||| | || ||||| |||| || || ||
Sbjct 9900439 TCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 9900380
Query 114372 AAAATCTGCAT 114382
|| ||||||||
Sbjct 9900379 AAGATCTGCAT 9900369
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| |||||||| || |||||||| || || || ||| |||||| || || || ||
Sbjct 9901471 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9901412
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| ||||| || || |||||||||||||| ||||||||
Sbjct 9901411 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCTTTGTCTTGGATCTTTTG---- 9901356
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || |||| ||| | || ||||| |||| ||
Sbjct 9901355 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9901296
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 9901295 TTCACGAAGATCTGCAT 9901279
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/197 (71%), Gaps = 1/197 (1%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || |||||||| || || || ||| |||||| || || || ||
Sbjct 9901019 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9900960
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| |||| | | ||| ||||| || || |||||||||||||| |||||| ||
Sbjct 9900959 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9900900
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| |||||| ||| || || |||| ||| | || ||||| |||| ||
Sbjct 9900899 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCA-GGTGATGGTCTTGCCAGTCAAGGTC 9900841
Query 114366 TTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 9900840 TTCACAAAGATCTGCAT 9900824
>seq73
Length=13007589
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || |||| ||| | ||| | |||||||| || ||||||||||| ||
Sbjct 8615525 ACCACCACGAAGCCTCAGAACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGA 8615584
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||| ||| |||||| ||||| || || || | || | | ||||| || || ||
Sbjct 8615585 CAAAGTTCGACCATCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGG 8615644
Query 114275 AATGCCTTCTTTGTC 114289
||| |||||||| ||
Sbjct 8615645 AATACCTTCTTTATC 8615659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420124640540472
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |