Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq103 98.7 8e-16 seq73 82.4 6e-11 >seq103 Length=10584223 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || || ||||| || |||||||| || || || ||| |||||| Sbjct 9900804 ACCAAATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCC 9900745 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || || |||| | | ||| ||||| |||||||||||||||||||| Sbjct 9900744 AGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATGCCTTCTTTGTCTTGG 9900685 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || | | |||| |||||| ||| || || |||| ||| | || ||| Sbjct 9900684 ATCTTCGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTG 9900625 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || || || |||||||| Sbjct 9900624 CCAGTCAAGGTCTTCACGAAGATCTGCAT 9900596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || || || || Sbjct 9900337 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9900278 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 9900277 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9900218 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| || | || Sbjct 9900217 ACATTCTCAATGGTGTCACTGGGCTCTACTTCCAGGGTGATGGTCTTGCCAGTTAAGGTC 9900158 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 9900157 TTCACAAAGATCTGCAT 9900141 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || || || || Sbjct 9901247 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9901188 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| |||||||||||||| |||||| || Sbjct 9901187 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9901128 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 9901127 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9901068 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 9901067 TTCACGAAGATCTGCAT 9901051 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 114192 TCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAG 114251 ||||| || |||||||| || || || ||| |||||| || || || || || || Sbjct 9900559 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCGGCAAAG 9900500 Query 114252 ATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT 114311 || | | ||| ||||| ||||| |||||||||||||| |||||| || | | Sbjct 9900499 ATCAACCTCTGCTGGTCTGGAGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTC 9900440 Query 114312 TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 114371 |||| |||||| ||| || || |||| ||| | || ||||| |||| || || || Sbjct 9900439 TCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACG 9900380 Query 114372 AAAATCTGCAT 114382 || |||||||| Sbjct 9900379 AAGATCTGCAT 9900369 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || |||||||| || |||||||| || || || ||| |||||| || || || || Sbjct 9901471 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9901412 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || || |||||||||||||| |||||||| Sbjct 9901411 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCTTTGTCTTGGATCTTTTG---- 9901356 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 9901355 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 9901296 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 9901295 TTCACGAAGATCTGCAT 9901279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || |||||||| || || || ||| |||||| || || || || Sbjct 9901019 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCCAGCTGCTTCCCG 9900960 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| || || |||||||||||||| |||||| || Sbjct 9900959 GCAAAGATCAACCTCTGCTGGTCGGGGGGGATGCCTTCTTTGTCTTGGATCTTTGCCTTG 9900900 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 9900899 ACATTCTCAATGGTGTCACTGGGCTCCACTTCCA-GGTGATGGTCTTGCCAGTCAAGGTC 9900841 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 9900840 TTCACAAAGATCTGCAT 9900824 >seq73 Length=13007589 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || |||| ||| | ||| | |||||||| || ||||||||||| || Sbjct 8615525 ACCACCACGAAGCCTCAGAACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGA 8615584 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| ||| |||||| ||||| || || || | || | | ||||| || || || Sbjct 8615585 CAAAGTTCGACCATCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGG 8615644 Query 114275 AATGCCTTCTTTGTC 114289 ||| |||||||| || Sbjct 8615645 AATACCTTCTTTATC 8615659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420124640540472