Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq36 253 2e-62 seq208 102 7e-17 >seq36 Length=18184789 Score = 253 bits (280), Expect = 2e-62 Identities = 446/650 (69%), Gaps = 0/650 (0%) Strand=Plus/Plus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 |||||| | ||||| | ||| || || |||||||||| ||||| | ||| || || Sbjct 7685927 AGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCCAGAGTGTGTACAAAATCACCT 7685986 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | || || || |||||||||| ||| || |||| ||||| || ||||||||||| Sbjct 7685987 GGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTG 7686046 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 || || || || | ||||| ||||| || | ||| || |||||||| ||||||||||| Sbjct 7686047 AACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCA 7686106 Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410 | |||||| || ||||| | ||| || || || | ||||||| | | || Sbjct 7686107 TTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCT 7686166 Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470 || ||||| |||||||||||||| ||||| || || ||||| |||| ||| || Sbjct 7686167 TTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCA 7686226 Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTAC 20530 | | | | ||| || | || || || | ||| || | || | || ||| Sbjct 7686227 ATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTAT 7686286 Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG 20590 | |||||||| || ||||||||||| || || || ||||||||||| || ||| |||| Sbjct 7686287 TCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTG 7686346 Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACT 20650 | | || || | ||| || || | || ||||| |||||| || || ||| Sbjct 7686347 GTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACT 7686406 Query 20651 CCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGC 20710 ||| | || |||||| | | | || ||||| | |||||| |||||||| | | Sbjct 7686407 CCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCC 7686466 Query 20711 ACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTA 20770 | || || ||| ||||| ||||| || || || || ||||| | || || || | Sbjct 7686467 AGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTG 7686526 Query 20771 TACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 || | ||| |||| |||||| | ||| | |||||| |||| |||||||| Sbjct 7686527 TAGCGGGCTTGCAAGCCAAACACAGACACGGTGCCGGTGCCCGTGCGGTC 7686576 >seq208 Length=5466430 Score = 102 bits (112), Expect = 7e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||||||| ||| || |||| ||||| || ||||| ||||| || || ||||| | ||| Sbjct 1463602 TGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACTCCGAGGCCC 1463543 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || ||||| || | ||| || |||||||| ||||||||||| | |||||| || ||| Sbjct 1463542 ATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGA 1463483 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | ||| || || || || ||||||| Sbjct 1463482 CAGAGAGCGTGGCATGGAGGCAGTGCCATCA 1463452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441362284293040