Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq36 253 2e-62
seq208 102 7e-17
>seq36
Length=18184789
Score = 253 bits (280), Expect = 2e-62
Identities = 446/650 (69%), Gaps = 0/650 (0%)
Strand=Plus/Plus
Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230
|||||| | ||||| | ||| || || |||||||||| ||||| | ||| || ||
Sbjct 7685927 AGTGGCCCAATATGATTCAAGTATATATGAGCATCTCCCAGAGTGTGTACAAAATCACCT 7685986
Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290
|| | || || || |||||||||| ||| || |||| ||||| || |||||||||||
Sbjct 7685987 GGCTTCAGGCCTGTGACATGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCAATGTTG 7686046
Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350
|| || || || | ||||| ||||| || | ||| || |||||||| |||||||||||
Sbjct 7686047 AACGGCACCCCAAGGCCCATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCA 7686106
Query 20351 TCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCC 20410
| |||||| || ||||| | ||| || || || | ||||||| | | ||
Sbjct 7686107 TTCAATACATAGAACTGACAGAGAGCGTGGCATGGAGGTAATGCCATCAGAGGAAGATCT 7686166
Query 20411 GCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCC 20470
|| ||||| |||||||||||||| ||||| || || ||||| |||| ||| ||
Sbjct 7686167 TTAGGATTCCAAGCACACATAATGATCCTTCTGTCATGAGGATTGGTTTTGATTGTGTCA 7686226
Query 20471 ACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTAC 20530
| | | | ||| || | || || || | ||| || | || | || |||
Sbjct 7686227 ATGACTTTTTGTAGTTGATCCACTCCTTGTCCAGAATAATCTGTATTCATCTCTTTGTAT 7686286
Query 20531 GCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTG 20590
| |||||||| || ||||||||||| || || || ||||||||||| || ||| ||||
Sbjct 7686287 TCTGCCCCAAAATGTCTCCACTGGAAGCCATACACTGGTCCCAAATCTCCTTCCTCTCTG 7686346
Query 20591 TGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACT 20650
| | || || | ||| || || | || ||||| |||||| || || |||
Sbjct 7686347 GTAGTGAACCCCTGCTTGTCCAAAAAGTCTCGAGATCCATTGGCGTCCCAGATTTTTACT 7686406
Query 20651 CCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGC 20710
||| | || |||||| | | | || ||||| | |||||| |||||||| | |
Sbjct 7686407 CCTTTGGCAGAGAGCTCCTTAGCATTTGTGGAACCCTTAATAAACCACAGCAGCTCCTCC 7686466
Query 20711 ACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAGACTA 20770
| || || ||| ||||| ||||| || || || || ||||| | || || || |
Sbjct 7686467 AGCACACCCTTCCAGAACACACGCTTGGTTGTCAGCAAAGGAAACTCATCTCGGAGGTTG 7686526
Query 20771 TACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820
|| | ||| |||| |||||| | ||| | |||||| |||| ||||||||
Sbjct 7686527 TAGCGGGCTTGCAAGCCAAACACAGACACGGTGCCGGTGCCCGTGCGGTC 7686576
>seq208
Length=5466430
Score = 102 bits (112), Expect = 7e-17
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308
||||||| ||| || |||| ||||| || ||||| ||||| || || ||||| | |||
Sbjct 1463602 TGAGCAATCATGTAGGTTAGCAGGGAGTAACTGGCGATGTTGAACGGCACTCCGAGGCCC 1463543
Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368
|| ||||| || | ||| || |||||||| ||||||||||| | |||||| || |||
Sbjct 1463542 ATATCTCCAGATCGCTGGTATAGCTGACAAGAAAGCTCACCATTCAATACATAGAACTGA 1463483
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| | ||| || || || || |||||||
Sbjct 1463482 CAGAGAGCGTGGCATGGAGGCAGTGCCATCA 1463452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441362284293040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |