Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04-
18] 1,906 sequences; 3,192,565,135 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq85 147 5e-30
seq65 132 1e-25
seq365 120 7e-22
seq73 104 6e-17
seq160 100 7e-16
seq46 91.5 3e-13
seq134 89.7 1e-12
seq376 86.0 1e-11
>seq85
Length=11587828
Score = 147 bits (162), Expect = 5e-30
Identities = 147/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||| | ||||||| ||| || || || ||||||| |||||||| || ||
Sbjct 256563 TCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCCATCTTCTAGCTGTTTTCCAGCAAAA 256504
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||||||| | ||| |||||| ||||| || ||||||||||| ||||| || ||
Sbjct 256503 ATCAGACGTTACTGATCTGGTGGGATACCTTCCTTTTCCTGGATTTTGGCTTTGACATTC 256444
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| ||| || | ||| || || || ||||| ||||| || ||||| ||||| ||
Sbjct 256443 TCGATAGTATCACTGGGTTCAACCTCAAGAGTGATAGTCTTGCCTGTCAGGGTCTTCACA 256384
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 256383 AAGATCTGCAT 256373
>seq65
Length=13810318
Score = 132 bits (146), Expect = 1e-25
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||||| | || || || ||||||| |||||||| || ||
Sbjct 5575252 TCTTTCTGGATGTTGTAGTCGGAGGAAGTTCGGCCATCTTCTAGCTGTTTTCCAGCAAAA 5575311
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||| |||| |||||| |||||| ||||| || ||||||||||| ||||| || ||
Sbjct 5575312 ATCGGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTC 5575371
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| ||| || | ||| || || || ||||| ||||| | ||||| ||||| ||
Sbjct 5575372 TCGATAGTATCACTGGGTTCAACCTCAAGAGTGATGGTCTTGCTCGTCAGGGTCTTCACA 5575431
Query 288463 AATATCTGCAT 288473
|| ||| ||||
Sbjct 5575432 AAGATCCGCAT 5575442
>seq365
Length=1348131
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | ||| || | || ||||||| |||||||| || ||
Sbjct 790440 TCTTTCTGGATGTTGTAGTCAGAGAGAGTTTGGCCATCTTCTAGTTGTTTTCTAGCAAAA 790381
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|||| || |||| | |||||| ||||| || ||||||||||| ||||| || ||
Sbjct 790380 ATCAAACATTGTTCATCTGGTGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTC 790321
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| ||| ||| || | ||| || || || ||||| ||||| || |||| ||||| ||
Sbjct 790320 TCGATAATATCACTGGGTTCAACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACA 790261
Query 288463 AATATCTGCAT 288473
|| ||||| ||
Sbjct 790260 AAGATCTGTAT 790250
>seq73
Length=13007589
Score = 104 bits (114), Expect = 6e-17
Identities = 166/237 (70%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || || || || ||||||| || ||| || || || || ||||| |
Sbjct 8615526 CCACCACGAAGCCTCAGAACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAC 8615585
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || ||||| | ||| || || || || |||| | |||||| | ||
Sbjct 8615586 AAAGTTCGACCATCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGGA 8615645
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-----GCTCGA-T 288420
|| ||||||||||| || || || || || || ||| | |||| ||| | ||||
Sbjct 8615646 ATACCTTCTTTATCTTGTATCTTGGCCTTGACATTTGCAATAGTATCAGATGGTTCGACC 8615705
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| | || |||||||| |||||||| ||| |||||| ||||| |||||||| |||
Sbjct 8615706 TCAAGCTCAAGCGTGATGGTCTTCCCCATCAAAGTCTTCACGAAAATCTGCATCATG 8615762
>seq160
Length=7493426
Score = 100 bits (110), Expect = 7e-16
Identities = 163/233 (70%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || || || || ||||||| || || || || | || ||||| |
Sbjct 3645736 CCACCACGAAGCCTCAGAACAAGATGAAAGGTAGACTCCTTCTGAACGTTGTAGTCAGAT 3645795
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | || |||| | ||| ||||| || |||| | |||||| || |||
Sbjct 3645796 AAAGTTCAACCACCTTCCAGTTGACCGCCTGCAAAAATCAATCTTTGTTGA---TCAGGG 3645852
Query 288367 --ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424
|| ||||| ||||| || || || |||||||||||||| |||| || | || ||| |
Sbjct 3645853 GAATACCTTCCTTATCTTGTATCTTGGCTTTCACGTTTTCAATAGTATGGGACGGTTCGA 3645912
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||| |||| |||||| || || |||| |||| ||
Sbjct 3645913 TCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTACATTGTG 3645965
>seq46
Length=16939101
Score = 91.5 bits (100), Expect = 3e-13
Identities = 155/225 (69%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308
||| || || || || || ||||||| || || || || || || ||||| | |
Sbjct 5708504 ACCACGAAGCCTCAGAACAAGATGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGACAA 5708445
Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368
|| || || ||||| | ||| || ||||| || |||| | |||||| | || |
Sbjct 5708444 AGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAAATCAATCTTTGTTGATCAGGGGGAGT 5708385
Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428
|| || ||||| || | || || || || ||||| ||| || | ||| || ||
Sbjct 5708384 ACCATCCTTATCTTGTACCTTGGCCTTGACATTTTCAGTAGTGTCAGATGGTTCGACCTC 5708325
Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||||||||||| |||||| ||||| ||||||||
Sbjct 5708324 AAGAGTGATGGTCTTCCCGGTCAAAGTCTTCACGAAAATCTGCAT 5708280
>seq134
Length=8699209
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429
||||| || ||||||||||| ||||| || || || |||| ||| || | ||| || ||
Sbjct 5518648 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCA 5518707
Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| ||||| ||||| || ||||| ||||| || || ||||||||
Sbjct 5518708 AGAGTGATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 5518751
>seq376
Length=1108405
Score = 86.0 bits (94), Expect = 1e-11
Identities = 135/192 (70%), Gaps = 1/192 (1%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||||| |||||| | || |||| || ||| ||| | ||| | ||| ||
Sbjct 693653 TTCTTTCTGGATATCATAGTCAGAAAGGGTGCAGCCATCTGCTAGCTTTTTGCTTGCAAA 693712
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||| || | ||| | | || | || ||||| ||||||||| | || || || ||
Sbjct 693713 GATGAGCCTCTGCTAGTCAGGAGGCGTGCCATCTTTGTCCTGGATTCTGGCCTTTACATT 693772
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
| || | ||| || | || || || ||||| | ||||| || ||||| ||||| ||
Sbjct 693773 CTA-ATGGTATCACTGGGCTCCACCTCCAGCGTAAAGGTCTTGCCTGTCAGGGTCTTCAC 693831
Query 288462 GAATATCTGCAT 288473
|||||||||||
Sbjct 693832 AAATATCTGCAT 693843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179625592102268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |