Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phascolarctos_20cinereus_20[genbank_20GCA_5F002099425.1_202017-04- 18] 1,906 sequences; 3,192,565,135 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq85 147 5e-30 seq65 132 1e-25 seq365 120 7e-22 seq73 104 6e-17 seq160 100 7e-16 seq46 91.5 3e-13 seq134 89.7 1e-12 seq376 86.0 1e-11 >seq85 Length=11587828 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||| | ||||||| ||| || || || ||||||| |||||||| || || Sbjct 256563 TCTTTCTGGATAATGTAGTCGGAGAGAGTTCGGCCATCTTCTAGCTGTTTTCCAGCAAAA 256504 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||||||| | ||| |||||| ||||| || ||||||||||| ||||| || || Sbjct 256503 ATCAGACGTTACTGATCTGGTGGGATACCTTCCTTTTCCTGGATTTTGGCTTTGACATTC 256444 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || | ||| || || || ||||| ||||| || ||||| ||||| || Sbjct 256443 TCGATAGTATCACTGGGTTCAACCTCAAGAGTGATAGTCTTGCCTGTCAGGGTCTTCACA 256384 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 256383 AAGATCTGCAT 256373 >seq65 Length=13810318 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||||| | || || || ||||||| |||||||| || || Sbjct 5575252 TCTTTCTGGATGTTGTAGTCGGAGGAAGTTCGGCCATCTTCTAGCTGTTTTCCAGCAAAA 5575311 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||| |||| |||||| |||||| ||||| || ||||||||||| ||||| || || Sbjct 5575312 ATCGGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTC 5575371 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || | ||| || || || ||||| ||||| | ||||| ||||| || Sbjct 5575372 TCGATAGTATCACTGGGTTCAACCTCAAGAGTGATGGTCTTGCTCGTCAGGGTCTTCACA 5575431 Query 288463 AATATCTGCAT 288473 || ||| |||| Sbjct 5575432 AAGATCCGCAT 5575442 >seq365 Length=1348131 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| || | || ||||||| |||||||| || || Sbjct 790440 TCTTTCTGGATGTTGTAGTCAGAGAGAGTTTGGCCATCTTCTAGTTGTTTTCTAGCAAAA 790381 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| || |||| | |||||| ||||| || ||||||||||| ||||| || || Sbjct 790380 ATCAAACATTGTTCATCTGGTGGGATACCTTCCTTGTCCTGGATTTTGGCTTTGACATTC 790321 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || ||| ||| || | ||| || || || ||||| ||||| || |||| ||||| || Sbjct 790320 TCGATAATATCACTGGGTTCAACCTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACA 790261 Query 288463 AATATCTGCAT 288473 || ||||| || Sbjct 790260 AAGATCTGTAT 790250 >seq73 Length=13007589 Score = 104 bits (114), Expect = 6e-17 Identities = 166/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || ||||||| || ||| || || || || ||||| | Sbjct 8615526 CCACCACGAAGCCTCAGAACAAGATGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGAC 8615585 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| | ||| || || || || |||| | |||||| | || Sbjct 8615586 AAAGTTCGACCATCTTCCAGTTGCTTGCCCGCAAAAATCAATCTTTGTTGATCAGGGGGA 8615645 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-----GCTCGA-T 288420 || ||||||||||| || || || || || || ||| | |||| ||| | |||| Sbjct 8615646 ATACCTTCTTTATCTTGTATCTTGGCCTTGACATTTGCAATAGTATCAGATGGTTCGACC 8615705 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | || |||||||| |||||||| ||| |||||| ||||| |||||||| ||| Sbjct 8615706 TCAAGCTCAAGCGTGATGGTCTTCCCCATCAAAGTCTTCACGAAAATCTGCATCATG 8615762 >seq160 Length=7493426 Score = 100 bits (110), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || || || || ||||||| || || || || | || ||||| | Sbjct 3645736 CCACCACGAAGCCTCAGAACAAGATGAAAGGTAGACTCCTTCTGAACGTTGTAGTCAGAT 3645795 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | || |||| | ||| ||||| || |||| | |||||| || ||| Sbjct 3645796 AAAGTTCAACCACCTTCCAGTTGACCGCCTGCAAAAATCAATCTTTGTTGA---TCAGGG 3645852 Query 288367 --ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 || ||||| ||||| || || || |||||||||||||| |||| || | || ||| | Sbjct 3645853 GAATACCTTCCTTATCTTGTATCTTGGCTTTCACGTTTTCAATAGTATGGGACGGTTCGA 3645912 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| |||| |||||| || || |||| |||| || Sbjct 3645913 TCTCGAGGGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAAATCTACATTGTG 3645965 >seq46 Length=16939101 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 288249 ACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAG 288308 ||| || || || || || ||||||| || || || || || || ||||| | | Sbjct 5708504 ACCACGAAGCCTCAGAACAAGATGAAGTGTAGACTCCTTCTGAATGTTGTAGTCAGACAA 5708445 Query 288309 CGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGAT 288368 || || || ||||| | ||| || ||||| || |||| | |||||| | || | Sbjct 5708444 AGTTCGACCATCTTCCAGTTGCTTGCCTGCAAAAATCAATCTTTGTTGATCAGGGGGAGT 5708385 Query 288369 TCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTC 288428 || || ||||| || | || || || || ||||| ||| || | ||| || || Sbjct 5708384 ACCATCCTTATCTTGTACCTTGGCCTTGACATTTTCAGTAGTGTCAGATGGTTCGACCTC 5708325 Query 288429 GAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||||| |||||| ||||| |||||||| Sbjct 5708324 AAGAGTGATGGTCTTCCCGGTCAAAGTCTTCACGAAAATCTGCAT 5708280 >seq134 Length=8699209 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| ||||| || || || |||| ||| || | ||| || || Sbjct 5518648 CCTTCCTTGTCCTGGATTTTGGCTTTGACATTCTCGATAGTATCACTGGGTTCAACCTCA 5518707 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| || ||||| ||||| || || |||||||| Sbjct 5518708 AGAGTGATAGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 5518751 >seq376 Length=1108405 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||||| |||||| | || |||| || ||| ||| | ||| | ||| || Sbjct 693653 TTCTTTCTGGATATCATAGTCAGAAAGGGTGCAGCCATCTGCTAGCTTTTTGCTTGCAAA 693712 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||| | | || | || ||||| ||||||||| | || || || || Sbjct 693713 GATGAGCCTCTGCTAGTCAGGAGGCGTGCCATCTTTGTCCTGGATTCTGGCCTTTACATT 693772 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 | || | ||| || | || || || ||||| | ||||| || ||||| ||||| || Sbjct 693773 CTA-ATGGTATCACTGGGCTCCACCTCCAGCGTAAAGGTCTTGCCTGTCAGGGTCTTCAC 693831 Query 288462 GAATATCTGCAT 288473 ||||||||||| Sbjct 693832 AAATATCTGCAT 693843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179625592102268